ViewGene
Locus Name:
GeneID:
Location:

GeneID:3972
TrivialName: PA14_61390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61390
PAO1 Ortholog Locus:PA4639
Sequence Length:588
Protein Length:195
Start: 5479579
Stop: 5478992
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08027.1|AE004878_5 (AE004878) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/195 (100%), Positives = 195/195 (100%)
Sequence:
ATGCTGCATCGCCTGTTGCTCAGCCTGATGACCGCAAGCGCCCTGGTTCTCGGCGGCTGCGCCCTGAGCCCG
CAACAACTGGACCCGCAACCGGTCCTGAAAGGACCGTTGACCGCCGTCGGCCATGGCCAGCCGGTGGTGGTC
AAGGTGGTCGATGGCCGTCCCGGCCCGTCCCTGGGCACCCGCGGCGGCCTCTACGCCGATACCAGCACCCTG
ACCGTCCGTAGCGAGGACGTGGTGCCCAAGCTCCAGGCCCAGGCCGAGACGGCCGTGCGCCTGCTCGGCTAC
ACGCCTTCGGCCAACGCCTACAACGCGCCGCAACTGACCCTGACCCTGGCCGAGCTGAAGTACCAGTCGCCG
AAGGACGGCGTCTACGTCACCCAGGCCGACATCACCGCGACCTTCCGCGCCGACGTGCAGAACAGCAGCCGG
CGCTACACCGGTCGCTACGGCGCCTCGCTGAACCAGCGCTTCGGCATGGCGCCGAACCAGGCGACCAACAGC
AAGCTGGTCAGCGAGGTGCTCAGCGACGCCCTGACCCGCGTGTTCAAGGACCCGACCATCGCTCAGACCCTC
GGCCAGCAATGA
Translation:
MLHRLLLSLMTASALVLGGCALSPQQLDPQPVLKGPLTAVGHGQPVVVKVVDGRPGPSLGTRGGLYADTSTL
TVRSEDVVPKLQAQAETAVRLLGYTPSANAYNAPQLTLTLAELKYQSPKDGVYVTQADITATFRADVQNSSR
RYTGRYGASLNQRFGMAPNQATNSKLVSEVLSDALTRVFKDPTIAQTLGQQ*
AnnotationID:3979GeneID:3972
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 18:06:48
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4639
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66378.1|AE016265_12 (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 194

 Score =  281 bits (720), Expect = 1e-75
 Identities = 141/194 (72%), Positives = 162/194 (83%)

>gb|AAO54667.1| (AE016859) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 193

 Score =  270 bits (689), Expect = 5e-72
 Identities = 134/194 (69%), Positives = 161/194 (82%), Gaps = 1/194 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7946




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25089




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3972
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6211
                           PA4639_tr
                           translation of PA4639
                           195
                           99.99
                           99.99
                           0
                           979.0
     

     
     
172084
                           gb|AAG08027.1|AE004878_5
                           (AE004878) hypothetical protein PA4639 [Pseudomonas aeruginosa PAO1]
                           195
                           99.99
                           99.99
                           0
                           979.0
     

     
     
172085
                           gb|AAN66378.1|AE016265_12
                           (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
                           195
                           72.30
                           83.07
                           1
                           720.0
     

     
     
172086
                           gb|AAO54667.1|
                           (AE016859) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           195
                           68.71
                           82.56
                           2
                           691.0
     

     






      

          
GC ORFID: 46974How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4639Glimmer Score: 

          
Start: 4743259Stop: 4742672

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4639 translation of PA4639Homolog Bit Score 381.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4314 (ORF: BLASTX 270.0), t_PA4639 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCATCGCCTGTTGCTCAGCCTGATGACCGCAAGCGCCCTGGTTCTCGGCGGCTGCGCCCTGAGCCCG 
CAACAACTGGACCCGCAACCGGTCCTGAAAGGACCGTTGACCGCCGTCGGCCATGGCCAGCCGGTGGTGGTC 
AAGGTGGTCGATGGCCGTCCCGGCCCGTCCCTGGGCACCCGCGGCGGCCTCTACGCCGATACCAGCACCCTG 
ACCGTCCGTAGCGAGGACGTGGTGCCCAAGCTCCAGGCCCAGGCCGAGACGGCCGTGCGCCTGCTCGGCTAC 
ACGCCTTCGGCCAACGCCTACAACGCGCCGCAACTGACCCTGACCCTGGCCGAGCTGAAGTACCAGTCGCCG 
AAGGACGGCGTCTACGTCACCCAGGCCGACATCACCGCGACCTTCCGCGCCGACGTGCAGAACAGCAGCCGG 
CGCTACACCGGTCGCTACGGCGCCTCGCTGAACCAGCGCTTCGGCATGGCGCCGAACCAGGCGACCAACAGC 
AAGCTGGTCAGCGAGGTGCTCAGCGACGCCCTGACCCGCGTGTTCAAGGACCCGACCATCGCTCAGACCCTC 
GGCCAGCAATGA