ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3971

TrivialName: PA14_51540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_51540

PAO1 Ortholog Locus:

Sequence Length: 570

Protein Length: 189

Start: 4583726

Stop: 4583157

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP82958.1| (AY273870) putative transposase [Pseudomonas aeruginosa] Identities = 189/189 (100%), Positives = 189/189 (100%)

Sequence:

ATGGTGAGGCGGCGGAGGGTCGCGGTGGCGCGCGAATGCCTGAGCCTGTCGAGCGCACCGAACCAGGTCTTG
TCGATGGATTTCGTCTTCGACGCGCTCAGCACTGGGCGACGGATCAAATGCCTGACGGTGGTCGATGACTTC
ACCAAGGTGTCGGTCGACATCTTGGTGGAGTACGGTATCAGCGGTTTTCGTGTCACGCGGGCGCTGGACGAG
ATGGCGCGGTTTCGTGGCTACCCGCAGGCGATCCGCACCGACCAGGGCCCCGAGTTCACCGGCAAGGCGCTT
GATCAGTGGGCCTGTCAGCGTGACATCAAGTTGAAGCTGATTCAGCCTGGCCAGCCCACGCAGAGCGCCTTC
ATCGAGTCATTCAACGGCAAGTTCCGGGGCGAATGCCTCAATGAGCACTGCTCGCTGGTCGAAGCCAGAATC
CGTATCGCGGCTTGGCGGGATTACAACGAGCACCGACCACACAGCGCCATTGGCAATCTCTCCCCGGCAGAG
CTTGCTGCGAAGTGGCGAACCAACCAGCAGCAGCTGAAGCGGGAAAAGTTGATATCAACCCCATAG

Translation:

MVRRRRVAVARECLSLSSAPNQVLSMDFVFDALSTGRRIKCLTVVDDFTKVSVDILVEYGISGFRVTRALDE
MARFRGYPQAIRTDQGPEFTGKALDQWACQRDIKLKLIQPGQPTQSAFIESFNGKFRGECLNEHCSLVEARI
RIAAWRDYNEHRPHSAIGNLSPAELAAKWRTNQQQLKREKLISTP*

AnnotationID:3978 GeneID:3971

AnnotatorUID: danlee

Modification Date/Time: 2005-08-26 15:03:40

Gene Name: RS13

Confidence Code: 3

GeneProduct: putative transposase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (22) Related to phage, transposon, or plasmid

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam00665, COG2801

Secondary Functional Category(ies): Putative enzyme

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam00665, rve, Integrase core domain. Score: 95.2, 4e-21
COG2801, Tra5, Transposase and inactivated derivatives. Score: 51.5, 7e-08

Genomic Context:

Comment:

ReferenceID:7944

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25087

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3971

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

171998 gb|AAP82958.1| (AY273870) putative transposase [Pseudomonas aeruginosa] 189 99.99 99.99 0 980.0

172007 gb|AAA25042.1| (M82980) ORF1 [Insertion sequence IS407] 193 60.62 72.53 14 582.0

172006 gb|AAK27406.1| (AY028370) hypothetical protein 1 [Burkholderia mallei] 193 60.62 72.53 14 582.0

6209 PA0987_tr translation of PA0987 280 60.00 62.85 91 838.0

171999 gb|AAG04376.1|AE004531_13 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 280 60.00 62.85 91 838.0

GC ORFID: `46973`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_RS13`	Glimmer Score:
Start: `370181`	Stop: `370750`
Length: `570`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_RS13 189 Homolog: PA0987 / Putative transposase; recombination-related / P. aeruginosa / PAO1 (AAG04376) translation of RS13`	Homolog Bit Score `382.0`
Other Homologs: `t_RS13 (ORF: GLIMMER)`
GC ORF Sequence
ATGGTGAGGCGGCGGAGGGTCGCGGTGGCGCGCGAATGCCTGAGCCTGTCGAGCGCACCGAACCAGGTCTTG TCGATGGATTTCGTCTTCGACGCGCTCAGCACTGGGCGACGGATCAAATGCCTGACGGTGGTCGATGACTTC ACCAAGGTGTCGGTCGACATCTTGGTGGAGTACGGTATCAGCGGTTTTCGTGTCACGCGGGCGCTGGACGAG ATGGCGCGGTTTCGTGGCTACCCGCAGGCGATCCGCACCGACCAGGGCCCCGAGTTCACCGGCAAGGCGCTT GATCAGTGGGCCTGTCAGCGTGACATCAAGTTGAAGCTGATTCAGCCTGGCCAGCCCACGCAGAGCGCCTTC ATCGAGTCATTCAACGGCAAGTTCCGGGGCGAATGCCTCAATGAGCACTGCTCGCTGGTCGAAGCCAGAATC CGTATCGCGGCTTGGCGGGATTACAACGAGCACCGACCACACAGCGCCATTGGCAATCTCTCCCCGGCAGAG CTTGCTGCGAAGTGGCGAACCAACCAGCAGCAGCTGAAGCGGGAAAAGTTGATATCAACCCCATAG