ViewGene
Locus Name:
GeneID:
Location:

GeneID:3970
TrivialName: PA14_24190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24190
PAO1 Ortholog Locus:
Sequence Length:933
Protein Length:310
Start: 2099307
Stop: 2100239
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO57271.1| (AE016869) 1-aminocyclopropane-1-carboxylate deaminase, putative [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 184/305 (60%), Positives = 211/305 (69%), Gaps = 8/305 (2%)
Sequence:
TTGCCGTTTCCCCACTGGTCACCGCATACACCCTTGCAGCGTCTCGAACTCGACTGGCTGCAACGGGCCGGG
GTCGAACTGGCGCTGCTGCGCCTGGACCAGGCCGATCCGTTGATCTCCGGCAACAAGGGGTTCAAGCTCGCG
CCACACCTGGCGCTGGCCCGCGAGCAGGGGCTGGACGGCCTGATCAGCCTCGGCGGCGCCCACTCCAACCAC
CTGCACGCGCTGGCCGGCGCCGGCGCGCGTTTCGATTTCCGTTGCGTCGGCCTGTTGCGCGGACACGAAGTC
GATACGCCGACGGTGCGCGACCTGCGCAGTCTCGGCATGGAACTGCACTGGCTCGGCTACGGCGGCTATCGC
CAGCGGCATGCCGCCGGTTTCTGGCTTCCCTGGCGGGAACGTTACCCAGGCTTGCTGCCGGTCGCCGAGGGC
GGTGGCGGGCTGCTGGGCGCGCGCGGTTGCATCGGGCTGGTGGAGCGCATAGCGACCCAGTTGCCGACGCTC
GGCTGGGACGATTACGACGCGATCTGGGTGGCCGCCGGTACCGGTACGACACTGGCCGGCCTGGTGCTCGGC
GAGGCTGGGCGGCATCCCGTGGTGGGCGCGCTGGCGGTGCCGGAGGACCACGGCGTCGCCGCCCAGGTCGCG
GCGACCCTTGCCGAGGCGGGCTGGGCCGATACCGGCTATCGCCTGCTGGACGCCAGCCGTGGCGGTTTCGCC
TGTCTCGATGGGAGGTTGGCGCGGTTCATCGTCGAGTTCGAGACGGCCAGCGGCGTCGCCCTCGAACCGCTG
TACACCGGCAAACTGCTGCTCGCCCTGCGCGAGGCCGTGGAGAGCGGCGCGGTGGCTCGCGGCAGCCGGCTG
GTGGCGCTGCACAGCGGAGGCCTGCAGGGCCGCCGGGCATTGCAGGAGCGTTTGCTGGCGTTGCTCTGA
Translation:
MPFPHWSPHTPLQRLELDWLQRAGVELALLRLDQADPLISGNKGFKLAPHLALAREQGLDGLISLGGAHSNH
LHALAGAGARFDFRCVGLLRGHEVDTPTVRDLRSLGMELHWLGYGGYRQRHAAGFWLPWRERYPGLLPVAEG
GGGLLGARGCIGLVERIATQLPTLGWDDYDAIWVAAGTGTTLAGLVLGEAGRHPVVGALAVPEDHGVAAQVA
ATLAEAGWADTGYRLLDASRGGFACLDGRLARFIVEFETASGVALEPLYTGKLLLALREAVESGAVARGSRL
VALHSGGLQGRRALQERLLALL*
AnnotationID:3977GeneID:3970
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 18:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative 1-aminocyclopropane-1-carboxylate deaminase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2515
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67623.1|AE016392_4 (AE016781) 1-aminocyclopropane-1-carboxylate deaminase, putative
           [Pseudomonas putida KT2440]
          Length = 297

 Score =  347 bits (890), Expect = 5e-95
 Identities = 179/293 (61%), Positives = 204/293 (69%), Gaps = 5/293 (1%)








 
Structural Features:
COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase 
[Amino acid transport and metabolism]
CD-Length = 323 residues,  97.5% aligned
Score =  126 bits (317), Expect = 5e-30
Identities = 89/322 (27%), Positives = 130/322 (40%), Gaps = 23/322 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14978




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25085




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32431




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3970_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3970
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
171997
                           gb|AAN67623.1|AE016392_4
                           (AE016781) 1-aminocyclopropane-1-carboxylate deaminase, putative [Pseudomonas putida KT2440]
                           315
                           57.77
                           65.71
                           23
                           884.0
     

     
     
171996
                           gb|AAO57271.1|
                           (AE016869) 1-aminocyclopropane-1-carboxylate deaminase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           57.27
                           65.63
                           22
                           912.0
     

     






      

          
GC ORFID: 46972How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene1424Glimmer Score: 

          
Start: 2854624Stop: 2853692

          
Length: 933


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene1424 related to: gi|17231939|ref|NP_488487.1| (NC_003272) probable 1-aminocyclopropane-1-carboxylate deaminase [Nostoc sp. PCC 7120] dbj|BAB76146.1| (AP003596) ORF_ID:alr4447~probable 1-aminocyclopropane-1-carboxylate deHomolog Bit Score 382.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1424 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCGTTTCCCCACTGGTCACCGCATACACCCTTGCAGCGTCTCGAACTCGACTGGCTGCAACGGGCCGGG 
GTCGAACTGGCGCTGCTGCGCCTGGACCAGGCCGATCCGTTGATCTCCGGCAACAAGGGGTTCAAGCTCGCG 
CCACACCTGGCGCTGGCCCGCGAGCAGGGGCTGGACGGCCTGATCAGCCTCGGCGGCGCCCACTCCAACCAC 
CTGCACGCGCTGGCCGGCGCCGGCGCGCGTTTCGATTTCCGTTGCGTCGGCCTGTTGCGCGGACACGAAGTC 
GATACGCCGACGGTGCGCGACCTGCGCAGTCTCGGCATGGAACTGCACTGGCTCGGCTACGGCGGCTATCGC 
CAGCGGCATGCCGCCGGTTTCTGGCTTCCCTGGCGGGAACGTTACCCAGGCTTGCTGCCGGTCGCCGAGGGC 
GGTGGCGGGCTGCTGGGCGCGCGCGGTTGCATCGGGCTGGTGGAGCGCATAGCGACCCAGTTGCCGACGCTC 
GGCTGGGACGATTACGACGCGATCTGGGTGGCCGCCGGTACCGGTACGACACTGGCCGGCCTGGTGCTCGGC 
GAGGCTGGGCGGCATCCCGTGGTGGGCGCGCTGGCGGTGCCGGAGGACCACGGCGTCGCCGCCCAGGTCGCG 
GCGACCCTTGCCGAGGCGGGCTGGGCCGATACCGGCTATCGCCTGCTGGACGCCAGCCGTGGCGGTTTCGCC 
TGTCTCGATGGGAGGTTGGCGCGGTTCATCGTCGAGTTCGAGACGGCCAGCGGCGTCGCCCTCGAACCGCTG 
TACACCGGCAAACTGCTGCTCGCCCTGCGCGAGGCCGTGGAGAGCGGCGCGGTGGCTCGCGGCAGCCGGCTG 
GTGGCGCTGCACAGCGGAGGCCTGCAGGGCCGCCGGGCATTGCAGGAGCGTTTGCTGGCGTTGCTCTGA