ViewGene
Locus Name:
GeneID:
Location:

GeneID:3969
TrivialName: PA14_57500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57500
PAO1 Ortholog Locus:PA4425
Sequence Length:594
Protein Length:197
Start: 5123484
Stop: 5124077
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07813.1|AE004857_4 (AE004857) probable phosphoheptose isomerase [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGGACATGCAACACCGTATCCGCCAGCTCTTCCAGGCCAGCATCGAGACCAAGCAGCAGGCGCTGGAAGTA
CTGCCTCCCTATATCGAGCAAGCCAGCCTGGTGATGGTCAATGCGCTGCTCAACGAGGGCAAGATCCTCTCC
TGCGGCAATGGCGGCTCGGCCGGCGATGCCCAGCACTTCTCCTCCGAACTGCTCAACCGCTTCGAGCGCGAA
CGTCCGAGCCTGCCGGCCGTGGCCCTGACCACCGACAGCTCGACCATCACCTCGATCGCCAACGACTACAGC
TACAACGAAGTCTTCTCCAAGCAGATCCGCGCCCTGGGCCAGCCGGGCGACGTCCTGCTGGCGATTTCCACC
AGCGGCAATTCGGCCAACGTGATCCAGGCCATCCAGGCTGCCCACGACCGCGAGATGCTGGTGGTCGCCCTG
ACCGGCCGCGACGGTGGCGGCATGGCTTCGCTGCTACTGCCGGAAGACGTGGAGATTCGCGTTCCTTCCAAG
ATCACCGCACGCATCCAGGAAGTCCACCTGCTGGCCATCCACTGCCTCTGCGACCTGATCGACCGCCAACTG
TTCGGGAGTGAAGAATGA
Translation:
MDMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERE
RPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVAL
TGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGSEE*
AnnotationID:3976GeneID:3969
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:21
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoheptose isomerase
Cell Localization:()
Synonyms:PA4425
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0279
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66947.1|AE016322_14 (AE016779) phosphoheptose isomerase [Pseudomonas putida KT2440]
          Length = 195

 Score =  355 bits (910), Expect = 1e-97
 Identities = 179/195 (91%), Positives = 191/195 (97%)

>gb|AAO57870.1| (AE016871) phosphoheptose isomerase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 195

 Score =  351 bits (901), Expect = 1e-96
 Identities = 176/195 (90%), Positives = 189/195 (96%)

>gb|AAN53383.1|AE015477_13 (AE015477) phosphoheptose isomerase [Shewanella oneidensis MR-1]
          Length = 197

 Score =  264 bits (675), Expect = 2e-70
 Identities = 135/195 (69%), Positives = 158/195 (81%)






 
Structural Features:
COG0279, GmhA, Phosphoheptose isomerase 
[Carbohydrate transport and metabolism]
CD-Length = 176 residues, 100.0% aligned
Score =  252 bits (645), Expect = 2e-68
Identities = 112/179 (62%), Positives = 144/179 (80%), Gaps = 3/179 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7940




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25083




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38120




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3969_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3969
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6208
                           PA4425_tr
                           translation of PA4425
                           197
                           99.99
                           99.99
                           0
                           980.0
     

     
     
171910
                           gb|AAG07813.1|AE004857_4
                           (AE004857) probable phosphoheptose isomerase [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           980.0
     

     
     
171911
                           gb|AAN66947.1|AE016322_14
                           (AE016779) phosphoheptose isomerase [Pseudomonas putida KT2440]
                           197
                           90.86
                           96.95
                           2
                           910.0
     

     
     
171912
                           gb|AAO57870.1|
                           (AE016871) phosphoheptose isomerase [Pseudomonas syringae pv. tomato str. DC3000]
                           197
                           89.34
                           95.93
                           2
                           901.0
     

     
     
171913
                           gb|AAN53383.1|AE015477_13
                           (AE015477) phosphoheptose isomerase [Shewanella oneidensis MR-1]
                           199
                           67.83
                           79.39
                           4
                           675.0
     

     






      

          
GC ORFID: 46971How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4425Glimmer Score: 

          
Start: 4387163Stop: 4387756

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4425 translation of PA4425Homolog Bit Score 382.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2010 (ORF: BLASTX 359.0), t_PA4425 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATGCAACACCGTATCCGCCAGCTCTTCCAGGCCAGCATCGAGACCAAGCAGCAGGCGCTGGAAGTA 
CTGCCTCCCTATATCGAGCAAGCCAGCCTGGTGATGGTCAATGCGCTGCTCAACGAGGGCAAGATCCTCTCC 
TGCGGCAATGGCGGCTCGGCCGGCGATGCCCAGCACTTCTCCTCCGAACTGCTCAACCGCTTCGAGCGCGAA 
CGTCCGAGCCTGCCGGCCGTGGCCCTGACCACCGACAGCTCGACCATCACCTCGATCGCCAACGACTACAGC 
TACAACGAAGTCTTCTCCAAGCAGATCCGCGCCCTGGGCCAGCCGGGCGACGTCCTGCTGGCGATTTCCACC 
AGCGGCAATTCGGCCAACGTGATCCAGGCCATCCAGGCTGCCCACGACCGCGAGATGCTGGTGGTCGCCCTG 
ACCGGCCGCGACGGTGGCGGCATGGCTTCGCTGCTACTGCCGGAAGACGTGGAGATTCGCGTTCCTTCCAAG 
ATCACCGCACGCATCCAGGAAGTCCACCTGCTGGCCATCCACTGCCTCTGCGACCTGATCGACCGCCAACTG 
TTCGGGAGTGAAGAATGA