ViewGene

Locus Name:
GeneID:
Location:

GeneID:3968
TrivialName: PA14_15850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15850
PAO1 Ortholog Locus:PA3755
Sequence Length:555
Protein Length:184
Start: 1351956
Stop: 1351402
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07142.1|AE004794_7 (AE004794) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/184 (100%), Positives = 184/184 (100%)
Sequence:
ATGAAATTCTGCAGCCTGTGCGGCGCCACGGTGGTCCAGCGCATCCCGGACGGCGACAACCGCCTGCGCTAC
GTCTGCGACGCCTGCCACACCGTGCACTACCAGAACCCGCGTATCGTCGCCGGCAGCCTGCCGGTGTGGGAC
GGCCAGGTCCTGCTCTGCCGTCGCGCCATTGCGCCGCGCCTGGGCTACTGGACGCTGCCGGCCGGCTTCATG
GAGAACGGCGAGACCCTCGCCCAGGCGGCGGCCCGCGAGACAGAGGAAGAAGCCAACGCGCGGATCGGCGAC
CTGCAGCTCTATACCCTTTTCGACCTGCCGCACATCAGCCAGGTCTACCTGTTCTTCCGCGCCGAGCTGCTC
GACCTGGATTTCTCCGCCGGCGATGAAAGCCTGGAGGTGCGGCTTTTCGACGAAGCGGAGATTCCCTGGTCG
GAGCTGGCTTTTCCGACCATCGGCCGTACCTTAGAATGCTACTTCAGCGACCGCCGCGAAGGCTGCTTCCCG
GTGCGCAACGAAGCCATTGCACCTATGCTGGCTTCCTATAAGAAAGACTGA
Translation:
MKFCSLCGATVVQRIPDGDNRLRYVCDACHTVHYQNPRIVAGSLPVWDGQVLLCRRAIAPRLGYWTLPAGFM
ENGETLAQAAARETEEEANARIGDLQLYTLFDLPHISQVYLFFRAELLDLDFSAGDESLEVRLFDEAEIPWS
ELAFPTIGRTLECYFSDRREGCFPVRNEAIAPMLASYKKD*
AnnotationID:3975GeneID:3968
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 22:10:35
Gene Name:
Confidence Code:3
GeneProduct:MutT/nudix family protein
Cell Localization:()
Synonyms:PA3755
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1051
Secondary Functional Category(ies):DNA replication, recombination, modification and repair
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67074.1|AE016336_6 (AE016779) MutT/nudix family protein [Pseudomonas putida KT2440]
          Length = 183

 Score =  262 bits (670), Expect = 7e-70
 Identities = 126/180 (70%), Positives = 142/180 (78%)

>gb|AAO54983.1| (AE016861) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 183

 Score =  250 bits (638), Expect = 3e-66
 Identities = 117/176 (66%), Positives = 143/176 (81%)

>emb|CAD85069.1| (BX321860) NUDIX hydrolase [Nitrosomonas europaea ATCC 19718]
          Length = 185

 Score =  221 bits (564), Expect = 1e-57
 Identities = 102/165 (61%), Positives = 124/165 (75%)
Structural Features:
COG1051, ADP-ribose pyrophosphatase 
[Nucleotide transport and metabolism]
CD-Length = 145 residues, 100.0% aligned
Score =  117 bits (295), Expect = 1e-27
Identities = 55/145 (37%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Genomic Context:
Comment:
ReferenceID:7938
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25081
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31803
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3968_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3968

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6207 PA3755_tr translation of PA3755 184 99.99 99.99 0 981.0
171898 gb|AAG07142.1|AE004794_7 (AE004794) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 184 99.99 99.99 0 981.0
171899 gb|AAN67074.1|AE016336_6 (AE016779) MutT/nudix family protein [Pseudomonas putida KT2440] 184 68.47 77.17 1 665.0
171900 gb|AAO54983.1| (AE016861) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000] 187 63.10 78.60 7 634.0
171902 emb|CAD85069.1| (BX321860) NUDIX hydrolase [Nitrosomonas europaea ATCC 19718] 186 56.98 69.89 3 555.0
GC ORFID: 46970How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3755Glimmer Score:
Start: 3601981Stop: 3602535
Length: 555
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3755 translation of PA3755Homolog Bit Score 382.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4846 (ORF: BLASTX 252.0), psyr_15may02_Scaffold1_revised_gene158 (ORF: BLASTX 165.0), t_PA3755 (ORF: GLIMMER)
GC ORF Sequence
ATGAAATTCTGCAGCCTGTGCGGCGCCACGGTGGTCCAGCGCATCCCGGACGGCGACAACCGCCTGCGCTAC
GTCTGCGACGCCTGCCACACCGTGCACTACCAGAACCCGCGTATCGTCGCCGGCAGCCTGCCGGTGTGGGAC
GGCCAGGTCCTGCTCTGCCGTCGCGCCATTGCGCCGCGCCTGGGCTACTGGACGCTGCCGGCCGGCTTCATG
GAGAACGGCGAGACCCTCGCCCAGGCGGCGGCCCGCGAGACAGAGGAAGAAGCCAACGCGCGGATCGGCGAC
CTGCAGCTCTATACCCTTTTCGACCTGCCGCACATCAGCCAGGTCTACCTGTTCTTCCGCGCCGAGCTGCTC
GACCTGGATTTCTCCGCCGGCGATGAAAGCCTGGAGGTGCGGCTTTTCGACGAAGCGGAGATTCCCTGGTCG
GAGCTGGCTTTTCCGACCATCGGCCGTACCTTAGAATGCTACTTCAGCGACCGCCGCGAAGGCTGCTTCCCG
GTGCGCAACGAAGCCATTGCACCTATGCTGGCTTCCTATAAGAAAGACTGA