ViewGene
Locus Name:
GeneID:
Location:

GeneID:3967
TrivialName: PA14_19650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19650
PAO1 Ortholog Locus:PA3436
Sequence Length:558
Protein Length:185
Start: 1696665
Stop: 1696108
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06824.1|AE004764_10 (AE004764) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 185/185 (100%), Positives = 185/185 (100%)
Sequence:
ATGTCTACCGCTCCCGTTACCCTGCTGGTGGCCCGCCGCGTCGCCGCCGGCCGTTACCGCGACTTCCTCGCC
TGGCAGCGCGAAGGCGAAGCCCTCGCCGCCGACTTCCCCGGCTACCTCGGCTCCGGGGCGCTGGCGCCGCCC
GCTGGCGGAGACGAATTCCAGATGATCTTTCGCTTCGCCGACGACGCCACCCTCGCCGCCTGGGCCCACTCC
GCCTCGCGCCAGGCCTGGCTCGAACGCGGCCAGGGACTCTTCGACGAACCGCGCGAGCACCGCGCCCACGGA
CTCGCCGCCTGGTTCGACGACAACCGCAAACCGCCGCGCTGGAAGCAGAGCGTGGCGATCTGGCTGGCGTTC
TTCCCGGTCTCGCTGGCCTTCAACCTCGGCGCCGGCCCCTACCTCGGCGAGCTGTCGCTGGCCGCGCGGGTG
CTGCTCAGCACGCTGGTCCTCACCCCGTTGATGACCTACTGGTTCATTCCCCTCTCCAGCCGTCTGCTCGCC
CCTTGGCTGCACCGCCGCCCGCAGCGCGCCGCCAGCCTGCCGGAAGCGCACTGA
Translation:
MSTAPVTLLVARRVAAGRYRDFLAWQREGEALAADFPGYLGSGALAPPAGGDEFQMIFRFADDATLAAWAHS
ASRQAWLERGQGLFDEPREHRAHGLAAWFDDNRKPPRWKQSVAIWLAFFPVSLAFNLGAGPYLGELSLAARV
LLSTLVLTPLMTYWFIPLSSRLLAPWLHRRPQRAASLPEAH*
AnnotationID:3974GeneID:3967
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:40
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3436
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE41852.1| (BX640415) putative membrane protein [Bordetella pertussis]
          Length = 186

 Score =  177 bits (449), Expect = 3e-44
 Identities = 86/176 (48%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

>emb|CAE32217.1| (BX640442) putative membrane protein [Bordetella bronchiseptica]
          Length = 182

 Score =  176 bits (446), Expect = 6e-44
 Identities = 86/176 (48%), Positives = 113/176 (64%), Gaps = 1/176 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7936




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32132




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3967_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3967
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6206
                           PA3436_tr
                           translation of PA3436
                           185
                           99.99
                           99.99
                           0
                           980.0
     

     
     
171892
                           gb|AAG06824.1|AE004764_10
                           (AE004764) hypothetical protein PA3436 [Pseudomonas aeruginosa PAO1]
                           185
                           99.99
                           99.99
                           0
                           980.0
     

     
     
171893
                           gb|AAN70204.1|AE016660_1
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           187
                           66.31
                           75.40
                           3
                           641.0
     

     
     
171894
                           gb|AAO54711.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           190
                           61.05
                           71.57
                           5
                           612.0
     

     
     
171895
                           emb|CAE41852.1|
                           (BX640415) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           191
                           46.07
                           61.25
                           11
                           448.0
     

     






      

          
GC ORFID: 46969How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3436Glimmer Score: 

          
Start: 3257267Stop: 3257824

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3436 translation of PA3436Homolog Bit Score 382.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5032 (ORF: BLASTX 245.0), t_PA3436 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTACCGCTCCCGTTACCCTGCTGGTGGCCCGCCGCGTCGCCGCCGGCCGTTACCGCGACTTCCTCGCC 
TGGCAGCGCGAAGGCGAAGCCCTCGCCGCCGACTTCCCCGGCTACCTCGGCTCCGGGGCGCTGGCGCCGCCC 
GCTGGCGGAGACGAATTCCAGATGATCTTTCGCTTCGCCGACGACGCCACCCTCGCCGCCTGGGCCCACTCC 
GCCTCGCGCCAGGCCTGGCTCGAACGCGGCCAGGGACTCTTCGACGAACCGCGCGAGCACCGCGCCCACGGA 
CTCGCCGCCTGGTTCGACGACAACCGCAAACCGCCGCGCTGGAAGCAGAGCGTGGCGATCTGGCTGGCGTTC 
TTCCCGGTCTCGCTGGCCTTCAACCTCGGCGCCGGCCCCTACCTCGGCGAGCTGTCGCTGGCCGCGCGGGTG 
CTGCTCAGCACGCTGGTCCTCACCCCGTTGATGACCTACTGGTTCATTCCCCTCTCCAGCCGTCTGCTCGCC 
CCTTGGCTGCACCGCCGCCCGCAGCGCGCCGCCAGCCTGCCGGAAGCGCACTGA