ViewGene
Locus Name:
GeneID:
Location:

GeneID:3966
TrivialName: PA14_29570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29570
PAO1 Ortholog Locus:PA2669
Sequence Length:585
Protein Length:194
Start: 2564087
Stop: 2564671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06057.1|AE004695_10 (AE004695) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/194 (99%), Positives = 193/194 (99%)
Sequence:
ATGTCGGACTTCCAGCGATCACTGCAGTTCCAGGGGCGGAACCTGCAACGACAATGGCAGGAAAAACCACTC
TTGCGCATGGCCATCTGGAGCCTGTGCCTGCTGCTGGTTGTGCATCTGGTCATGCTCAGCATGGATTGGAGG
GAGGAACGAGGGGAGGAATATCGTCGTCTGGCCGGGGAATGGCTCAAGCTCCAGGACGTTTCCCGGCAGACC
GCCTGGCCGGAGCGGGCGATGCAGGCGGAGCAGGTACTGAACCTTCAGCGAGAGCGCTTCTGGCAGGCGCCG
AATGCGTCGCAGGCGAGGGCCGATGTGCAGGCCTGGCTGACCGAGCGGGTTCGCCTGGCGGGCGTCCCTGAC
GCGGAAGTGAGCGTACTGCTTCCTCGCGGCTTCGAGAAGCAAGGGACGATCGCGCGTATCGAGGCCCAGGTT
CGCGGGCAGTTGCAGCCAGCCTCGTTCAGTCGGTTGTTGCAGGATATAGAAGCGGAGCAGCGGCAAGTATCG
GTGGAGTTTCTGGAACTGAACAATATGTCGTCGCCCATGCTCAATCTACAATTGTCGTTCCTGTTCGTAGCG
GCCTATTGA
Translation:
MSDFQRSLQFQGRNLQRQWQEKPLLRMAIWSLCLLLVVHLVMLSMDWREERGEEYRRLAGEWLKLQDVSRQT
AWPERAMQAEQVLNLQRERFWQAPNASQARADVQAWLTERVRLAGVPDAEVSVLLPRGFEKQGTIARIEAQV
RGQLQPASFSRLLQDIEAEQRQVSVEFLELNNMSSPMLNLQLSFLFVAAY*
AnnotationID:3973GeneID:3966
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2669
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hit above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7934




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25077




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3966
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6205
                           PA2669_tr
                           translation of PA2669
                           194
                           99.48
                           99.48
                           0
                           981.0
     

     
     
171891
                           gb|AAG06057.1|AE004695_10
                           (AE004695) hypothetical protein PA2669 [Pseudomonas aeruginosa PAO1]
                           194
                           99.48
                           99.48
                           0
                           981.0
     

     






      

          
GC ORFID: 46968How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2669Glimmer Score: 

          
Start: 2389839Stop: 2389255

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2669 translation of PA2669Homolog Bit Score 382.0

          
Other Homologs:  t_PA2669 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGACTTCCAGCGATCACTGCAGTTCCAGGGGCGGAACCTGCAACGACAATGGCAGGAAAAACCACTC 
TTGCGCATGGCCATCTGGAGCCTGTGCCTGCTGCTGGTTGTGCATCTGGTCATGCTCAGCATGGATTGGAGG 
GAGGAACGAGGGGAGGAATATCGTCGTCTGGCCGGGGAATGGCTCAAGCTCCAGGACGTTTCCCGGCAGACC 
GCCTGGCCGGAGCGGGCGATGCAGGCGGAGCAGGTACTGAACCTTCAGCGAGAGCGCTTCTGGCAGGCGCCG 
AATGCGTCGCAGGCGAGGGCCGATGTGCAGGCCTGGCTGACCGAGCGGGTTCGCCTGGCGGGCGTCCCTGAC 
GCGGAAGTGAGCGTACTGCTTCCTCGCGGCTTCGAGAAGCAAGGGACGATCGCGCGTATCGAGGCCCAGGTT 
CGCGGGCAGTTGCAGCCAGCCTCGTTCAGTCGGTTGTTGCAGGATATAGAAGCGGAGCAGCGGCAAGTATCG 
GTGGAGTTTCTGGAACTGAACAATATGTCGTCGCCCATGCTCAATCTACAATTGTCGTTCCTGTTCGTAGCG 
GCCTATTGA