ViewGene

Locus Name:
GeneID:
Location:

GeneID:3965
TrivialName: PA14_36450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36450
PAO1 Ortholog Locus:PA2176
Sequence Length:591
Protein Length:196
Start: 3246017
Stop: 3246607
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05564.1|AE004644_11 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/196 (100%), Positives = 196/196 (100%)
Sequence:
ATGCGCAATCTGGAAACCGCAACCCTGAAGCTGGGGATATTCCATCCCCACGACAGCCTGAGCCAGGCGCTG
ATCGCCGCCGCCTTGCAGCGACAGATCGAAGTCAGCGCCTTGCAAGCCGATCTCAACAGCCTGCAGGCGCGC
CCCGGGCTGCGCTGCAAGCCAGCCAGCCTGGCGTCGTCGATCGAGGTCAGCCAGGCGGCTGCCGGTCTCGAC
CTGCTGTTCGCGCCGTTGTCCGACTACGCCGCCGAAGCCTTGCCGCCGATCTGCGCCGCGCTGATCGATGGC
GCCCTGCGCGCCGAGGTACCGCGCCTGTTCCTGCTTGGCCATTGGCAATGGCTGGTGGCGCCGCGCGACGCC
GGCGAGGAGCAACTGGGTGCCGGGCTCGAGCGCAGCCTCACGGTCAGCGGCCTGGACTGGACGCTGGTGGAG
GTCCCGAGCCTGCCCGCCGGCCTGCGCATCGACGATTTCAGCCGCGCCGGCGACGTCGCGGAAGTGGAGGCC
GCCAGGGTATTCGCCTGCGCCGAAGCGCTGCTCGACGAAGTCCGTCTCGGCCTGCACAAGCGCCAGTGCCTG
CGCCTGGCGCCCTGA
Translation:
MRNLETATLKLGIFHPHDSLSQALIAAALQRQIEVSALQADLNSLQARPGLRCKPASLASSIEVSQAAAGLD
LLFAPLSDYAAEALPPICAALIDGALRAEVPRLFLLGHWQWLVAPRDAGEEQLGAGLERSLTVSGLDWTLVE
VPSLPAGLRIDDFSRAGDVAEVEAARVFACAEALLDEVRLGLHKRQCLRLAP*
AnnotationID:3972GeneID:3965
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2176
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7932
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25075
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32557
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3965_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3965

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6204 PA2176_tr translation of PA2176 196 99.99 99.99 0 981.0
171890 gb|AAG05564.1|AE004644_11 (AE004644) hypothetical protein PA2176 [Pseudomonas aeruginosa PAO1] 196 99.99 99.99 0 981.0
GC ORFID: 46967How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2176Glimmer Score:
Start: 1707898Stop: 1707308
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2176 translation of PA2176Homolog Bit Score 382.0
Other Homologs: t_PA2176 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCAATCTGGAAACCGCAACCCTGAAGCTGGGGATATTCCATCCCCACGACAGCCTGAGCCAGGCGCTG
ATCGCCGCCGCCTTGCAGCGACAGATCGAAGTCAGCGCCTTGCAAGCCGATCTCAACAGCCTGCAGGCGCGC
CCCGGGCTGCGCTGCAAGCCAGCCAGCCTGGCGTCGTCGATCGAGGTCAGCCAGGCGGCTGCCGGTCTCGAC
CTGCTGTTCGCGCCGTTGTCCGACTACGCCGCCGAAGCCTTGCCGCCGATCTGCGCCGCGCTGATCGATGGC
GCCCTGCGCGCCGAGGTACCGCGCCTGTTCCTGCTTGGCCATTGGCAATGGCTGGTGGCGCCGCGCGACGCC
GGCGAGGAGCAACTGGGTGCCGGGCTCGAGCGCAGCCTCACGGTCAGCGGCCTGGACTGGACGCTGGTGGAG
GTCCCGAGCCTGCCCGCCGGCCTGCGCATCGACGATTTCAGCCGCGCCGGCGACGTCGCGGAAGTGGAGGCC
GCCAGGGTATTCGCCTGCGCCGAAGCGCTGCTCGACGAAGTCCGTCTCGGCCTGCACAAGCGCCAGTGCCTG
CGCCTGGCGCCCTGA