ViewGene
Locus Name:
GeneID:
Location:

GeneID:3964
TrivialName: PA14_51470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51470
PAO1 Ortholog Locus:PA0992
Sequence Length:618
Protein Length:205
Start: 4576632
Stop: 4576015
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04381.1|AE004532_5 (AE004532) fimbrial subunit CupC1 [Pseudomonas aeruginosa PAO1]
Identities = 196/205 (95%), Positives = 201/205 (98%)
Sequence:
GTGTCCATTTCCATGAAAAGCATTCTGGCTGCCGCAGTAGCCAGCCTGGTCGTCGGCAATGCCATGGCGGCA
GACGGCACCATCAATTTCAAAGGTGAAATCACCGCGGCCGCTTGCAGCATCACTGGAGGTGCTGGCACCACC
GTTGGCGGTGCAGCGGGCAACCAGACCATCGACGTAAACCTCGGCAAGATCAGCATCGACTCGCTGAGCGGC
ACCGCGGGCGGCAGCATCGCTGGTGGTACCAGCCTGAATCTGAACCTGGACTGTGGCAAGACCGGTACCGGT
CTGACCACCGTGAAGCTGAAGTTCGACCCGATGTCCGGTACCGGCATCGATTCGCATAACGAAAGCCTGCTG
AAGCTTGGTAAAGACTCCACTGCCACTGGCGTCGGTATTGGCATCTATGGTTCCGATGGCAAGCTGCTGAAC
CTGTCGGCGAACGAGACCATTGATGCACCCTTGAATTCCAGGGTTGAAAAAGATGGCGAAGGCCAAGACATC
ACCCTTTACAGCGCCAATCTGAATCTGCGGGCTGCTTACGTAAAGTCTGGCGCTGCGGCCGCTACGGCAGGT
GTTGCCAACGGCTCCCTGCCCTTCACCCTGGAATACAACTAA
Translation:
MSISMKSILAAAVASLVVGNAMAADGTINFKGEITAAACSITGGAGTTVGGAAGNQTIDVNLGKISIDSLSG
TAGGSIAGGTSLNLNLDCGKTGTGLTTVKLKFDPMSGTGIDSHNESLLKLGKDSTATGVGIGIYGSDGKLLN
LSANETIDAPLNSRVEKDGEGQDITLYSANLNLRAAYVKSGAAAATAGVANGSLPFTLEYN*
AnnotationID:3971GeneID:3964
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 16:04:58
Gene Name:cupC1
Confidence Code:2
GeneProduct:fimbrial subunit CupC1
Cell Localization:()
Synonyms:PA0992
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:probable fimbrial subunit protein
Functional Category Confidence Code:5
COGs:COG3539, pfam00419
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3539, FimA, P pilus assembly protein, pilin FimA. Score: 60.9, 1e-10
pfam00419, Fimbrial, Fimbrial protein. Score: 57.2, 1e-09






   
Genomic Context:
Part of probable fimbrial gene cluster of "chaperone-usher pathway";
Adjacent to genes probably encoding fimbrial usher and chaperone proteins 






   
Comment:


















    ReferenceID:14976




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32095




  
Author/Investigator(s):
        Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.






  
Title:
        The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.





  
PubMed:
        11381121


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3964
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6203
                           PA0992_tr
                           translation of PA0992
                           205
                           95.60
                           98.04
                           0
                           980.0
     

     
     
171889
                           gb|AAG04381.1|AE004532_5
                           (AE004532) fimbrial subunit CupC1 [Pseudomonas aeruginosa PAO1]
                           205
                           95.12
                           98.04
                           0
                           977.0
     

     






      

          
GC ORFID: 46966How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0992Glimmer Score: 

          
Start: 377275Stop: 377892

          
Length: 618


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0992 translation of PA0992Homolog Bit Score 382.0

          
Other Homologs:  t_PA0992 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCATTTCCATGAAAAGCATTCTGGCTGCCGCAGTAGCCAGCCTGGTCGTCGGCAATGCCATGGCGGCA 
GACGGCACCATCAATTTCAAAGGTGAAATCACCGCGGCCGCTTGCAGCATCACTGGAGGTGCTGGCACCACC 
GTTGGCGGTGCAGCGGGCAACCAGACCATCGACGTAAACCTCGGCAAGATCAGCATCGACTCGCTGAGCGGC 
ACCGCGGGCGGCAGCATCGCTGGTGGTACCAGCCTGAATCTGAACCTGGACTGTGGCAAGACCGGTACCGGT 
CTGACCACCGTGAAGCTGAAGTTCGACCCGATGTCCGGTACCGGCATCGATTCGCATAACGAAAGCCTGCTG 
AAGCTTGGTAAAGACTCCACTGCCACTGGCGTCGGTATTGGCATCTATGGTTCCGATGGCAAGCTGCTGAAC 
CTGTCGGCGAACGAGACCATTGATGCACCCTTGAATTCCAGGGTTGAAAAAGATGGCGAAGGCCAAGACATC 
ACCCTTTACAGCGCCAATCTGAATCTGCGGGCTGCTTACGTAAAGTCTGGCGCTGCGGCCGCTACGGCAGGT 
GTTGCCAACGGCTCCCTGCCCTTCACCCTGGAATACAACTAA