ViewGene
Locus Name:
GeneID:
Location:

GeneID:3963
TrivialName: PA14_00240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00240
PAO1 Ortholog Locus:PA0022
Sequence Length:558
Protein Length:185
Start: 24022
Stop: 24579
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03412.1|AE004441_13 (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 185/185 (100%), Positives = 185/185 (100%)
Sequence:
ATGATCAGCAGCTTTCGTGCGCAATGCGCCGCCCGGGTCGTCCGCGAGGGCGGCGTGATCGCCTATCCCACC
GAGGCGGTATGGGGGCTCGGCTGCGACCCGTGGAACGAGGATGCGGTGTATCGCCTGCTGGCGCTGAAGGCG
CGGCCGGTGGAAAAGGGCCTGATCGTGGTGGCGGCGAACATCCACCAGCTCGACTTCCTTCTCGAAGACCTG
CCGGACGTCTGGCTGGACCGCCTGGCCGGTACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCACCAGGAG
CGCCTGCCGGAGTGGGTCACCGGCGTCCACGACAGCGTCGCCGTGCGGGTCACCGACCATCCCCTGGTACAG
GAACTGTGCCATCTCACCGGTCCGCTGATCTCCACCTCGGCCAATCCGGCCGGGCGCCCGGCGGCGCGCACG
CGGCTGCGGGTGGAGCAATACTTCCACGACGAGCTGGACGCCATCCTCGGCGGCGCCCTTGGCGGGCGCCGC
AACCCCAGCCTGATCCGCGACCTGGTGACCGGGCAGGTCATCCGCCCGGCCTGA
Translation:
MISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLLEDL
PDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVAVRVTDHPLVQELCHLTGPLISTSANPAGRPAART
RLRVEQYFHDELDAILGGALGGRRNPSLIRDLVTGQVIRPA*
AnnotationID:3970GeneID:3963
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:12
Gene Name:
Confidence Code:3
GeneProduct:putative translation factor
Cell Localization:()
Synonyms:PA0022
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0009,pfam01300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65704.1|AE016197_2 (AE016774) Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida
           KT2440]
          Length = 185

 Score =  310 bits (795), Expect = 2e-84
 Identities = 140/184 (76%), Positives = 163/184 (88%)

>gb|AAO53728.1| (AE016856) SUA5/yciO/yrdC family domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 185

 Score =  300 bits (769), Expect = 2e-81
 Identities = 135/183 (73%), Positives = 162/183 (88%)

>dbj|BAC61298.1| (AP005083) Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus]
          Length = 185

 Score =  171 bits (433), Expect = 2e-42
 Identities = 90/173 (52%), Positives = 118/173 (68%), Gaps = 3/173 (1%)






 
Structural Features:
COG0009, SUA5, Putative translation factor (SUA5) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 211 residues,  85.3% aligned
Score =  178 bits (454), Expect = 2e-46
Identities = 73/181 (40%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

pfam01300, Sua5_yciO_yrdC, yrdC domain.
CD-Length = 178 residues,  98.9% aligned
Score =  134 bits (338), Expect = 8e-33
Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 5/177 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7928




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33372




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3963_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3963
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6202
                           PA0022_tr
                           translation of PA0022
                           185
                           99.99
                           99.99
                           0
                           984.0
     

     
     
171856
                           gb|AAG03412.1|AE004441_13
                           (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           185
                           99.99
                           99.99
                           0
                           984.0
     

     
     
171857
                           gb|AAN65704.1|AE016197_2
                           (AE016774) Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
                           185
                           75.67
                           88.10
                           0
                           795.0
     

     
     
171858
                           gb|AAO53728.1|
                           (AE016856) SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           185
                           72.97
                           87.56
                           0
                           768.0
     

     
     
171863
                           emb|CAC89106.1|
                           (AJ414141) conserved hypothetical protein [Yersinia pestis CO92]
                           191
                           49.21
                           63.87
                           7
                           428.0
     

     






      

          
GC ORFID: 46965How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0022Glimmer Score: 

          
Start: 5825359Stop: 5825916

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0022 translation of PA0022Homolog Bit Score 383.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2983 (ORF: BLASTX 301.0), t_PA0022 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAGCAGCTTTCGTGCGCAATGCGCCGCCCGGGTCGTCCGCGAGGGCGGCGTGATCGCCTATCCCACC 
GAGGCGGTATGGGGGCTCGGCTGCGACCCGTGGAACGAGGATGCGGTGTATCGCCTGCTGGCGCTGAAGGCG 
CGGCCGGTGGAAAAGGGCCTGATCGTGGTGGCGGCGAACATCCACCAGCTCGACTTCCTTCTCGAAGACCTG 
CCGGACGTCTGGCTGGACCGCCTGGCCGGTACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCACCAGGAG 
CGCCTGCCGGAGTGGGTCACCGGCGTCCACGACAGCGTCGCCGTGCGGGTCACCGACCATCCCCTGGTACAG 
GAACTGTGCCATCTCACCGGTCCGCTGATCTCCACCTCGGCCAATCCGGCCGGGCGCCCGGCGGCGCGCACG 
CGGCTGCGGGTGGAGCAATACTTCCACGACGAGCTGGACGCCATCCTCGGCGGCGCCCTTGGCGGGCGCCGC 
AACCCCAGCCTGATCCGCGACCTGGTGACCGGGCAGGTCATCCGCCCGGCCTGA