ViewGene

Locus Name:
GeneID:
Location:

GeneID:3962
TrivialName: PA14_00110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00110
PAO1 Ortholog Locus:PA0010
Sequence Length:552
Protein Length:183
Start: 13540
Stop: 14091
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03400.1|AE004441_1 (AE004441) DNA-3-methyladenine glycosidase I [Pseudomonas aeruginosa PAO1]
Identities = 183/183 (100%), Positives = 183/183 (100%)
Sequence:
ATGCCACGCTGCTTCTGGTGCAACGACGATCCTCTCTACATGGCCTACCACGACGAGGAGTGGGGTGTGCCG
CAGCGCGATCCCGACGCGCTGTTCGAACTTCTGCTGCTGGAGGGCTTCCAGGCCGGGTTGTCCTGGATCACC
GTGCTGAAGAAGCGCGAGCGCTACCGCGAGGTGCTGTTCGGCTTCGACGTGCAGCGGGTGGCACAAATGAGC
GACGCTGAGATCGACGAACTGATGCTCGACCCCGGCATCATTCGCAATCGGGCCAAGCTCAACGCTGCGCGG
CAGAACGCCCAGGCCTGGCTGGAGCTGGATGACCCGGCTGGGTTCCTCTGGTCCTTCGTCGGCGGCCAGCCG
AAGATCAACCATTTCGCTGGTCGTGCCGAGGTGCCGGCGATTACCCCGGAAGCCGAGGCCATGAGCAAGGCG
CTGCGCAAGGCCGGCTTCAACTTCGTCGGGCCGACCATCTGCTACGCCTTCATGCAGGCCAGCGGCATGGTC
ATGGACCATACCCAGGACTGCGACCGTTACGCCCAACTCGTCGGCTAG
Translation:
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMS
DAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPAGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKA
LRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG*
AnnotationID:3969GeneID:3962
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:13
Gene Name:tag
Confidence Code:2
GeneProduct:DNA-3-methyladenine glycosidase I
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2818,pfam03352
Secondary Functional Category(ies):
EC Number:3.2.2.20
Status:ACTIVE
Pathway:
Homology:
>emb|CAA74898.1| (Y14568) tag [Pseudomonas fluorescens]
          Length = 185

 Score =  325 bits (833), Expect = 8e-89
 Identities = 154/182 (84%), Positives = 163/182 (89%)

>gb|AAN65696.1|AE016196_7 (AE016774) DNA-3-methyladenine glycosidase I [Pseudomonas putida
           KT2440]
          Length = 183

 Score =  303 bits (775), Expect = 4e-82
 Identities = 139/182 (76%), Positives = 160/182 (87%)

>gb|AAN53103.1|AE015453_5 (AE015453) DNA-3-methyladenine glycosidase I [Shewanella oneidensis
           MR-1]
          Length = 191

 Score =  212 bits (539), Expect = 1e-54
 Identities = 100/185 (54%), Positives = 130/185 (70%), Gaps = 4/185 (2%)
Structural Features:
COG2818, Tag, 3-methyladenine DNA glycosylase 
[DNA replication, recombination, and repair]
CD-Length = 188 residues,  98.9% aligned
Score =  271 bits (695), Expect = 3e-74
Identities = 105/186 (56%), Positives = 128/186 (68%), Gaps = 5/186 (2%)

pfam03352, Adenine_glyco, Methyladenine glycosylase.
CD-Length = 180 residues, 100.0% aligned
Score =  266 bits (681), Expect = 1e-72
Identities = 110/180 (61%), Positives = 135/180 (75%), Gaps = 5/180 (2%)
Genomic Context:
Comment:
ReferenceID:7926
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25069
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33376
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3962_cdd.html
URL:
ReferenceID:35527
Author/Investigator(s): Steinum AL, Seeberg E.
Title: Nucleotide sequence of the tag gene from Escherichia coli.
PubMed: 3520491
MedLine:
Source:
Nucleic Acids Res. 1986 May 12;14(9):3763-72.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3520491
Homologs By Global Alignment
Gene ID:3962

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6201 PA0010_tr translation of PA0010 183 99.99 99.99 0 984.0
171779 gb|AAG03400.1|AE004441_1 (AE004441) DNA-3-methyladenine glycosidase I [Pseudomonas aeruginosa PAO1] 183 99.99 99.99 0 984.0
171780 emb|CAA74898.1| (Y14568) tag [Pseudomonas fluorescens] 185 83.24 88.10 2 833.0
171781 gb|AAO53737.1| (AE016856) DNA-3-methyladenine glycosidase I [Pseudomonas syringae pv. tomato str. DC3000] 183 77.59 85.79 0 775.0
171782 gb|AAN65696.1|AE016196_7 (AE016774) DNA-3-methyladenine glycosidase I [Pseudomonas putida KT2440] 183 75.95 87.43 0 773.0
GC ORFID: 46964How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0010Glimmer Score:
Start: 5814877Stop: 5815428
Length: 552
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0010 translation of PA0010Homolog Bit Score 383.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene2972 (ORF: BLASTX 303.0), t_PA0010 (ORF: GLIMMER)
GC ORF Sequence
ATGCCACGCTGCTTCTGGTGCAACGACGATCCTCTCTACATGGCCTACCACGACGAGGAGTGGGGTGTGCCG
CAGCGCGATCCCGACGCGCTGTTCGAACTTCTGCTGCTGGAGGGCTTCCAGGCCGGGTTGTCCTGGATCACC
GTGCTGAAGAAGCGCGAGCGCTACCGCGAGGTGCTGTTCGGCTTCGACGTGCAGCGGGTGGCACAAATGAGC
GACGCTGAGATCGACGAACTGATGCTCGACCCCGGCATCATTCGCAATCGGGCCAAGCTCAACGCTGCGCGG
CAGAACGCCCAGGCCTGGCTGGAGCTGGATGACCCGGCTGGGTTCCTCTGGTCCTTCGTCGGCGGCCAGCCG
AAGATCAACCATTTCGCTGGTCGTGCCGAGGTGCCGGCGATTACCCCGGAAGCCGAGGCCATGAGCAAGGCG
CTGCGCAAGGCCGGCTTCAACTTCGTCGGGCCGACCATCTGCTACGCCTTCATGCAGGCCAGCGGCATGGTC
ATGGACCATACCCAGGACTGCGACCGTTACGCCCAACTCGTCGGCTAG