ViewGene
Locus Name:
GeneID:
Location:

GeneID:3960
TrivialName: PA14_21480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21480
PAO1 Ortholog Locus:PA3291
Sequence Length:555
Protein Length:184
Start: 1862506
Stop: 1863060
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06679.1|AE004751_5 (AE004751) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 179/184 (97%), Positives = 181/184 (98%)
Sequence:
ATGCAGAAGTTGATGAACTTGATCTGTGTGGGAAATAAAAAGTCCATTGGGCTGGTGGCTTTTCTCAGCACC
TTCTTTGGGCTGGTGGCATGCCAAGCTGGGCCTGAAGTGCTGTCTGCACCTATCATGGGTTACAACCATACT
CCGGCGGCGATTAACGAATTTACGGTGAATGGTGCTGGCGGACCGAACTTAGGTCCTTATCAGGGAGATGGT
AGTCAAGTTTGTTGTGGGGTAATTCCAAAGAGATGGAATCCAAATTTGAAAGTTATTGTGGAATGGGAGAAG
GATCCCAATCCCCGTGCCGTTATAAAACGAGATAAATATGGGCGGTTGGATGAGAGTGATTATTTGAGGCAT
GCCTCAAGTTACACCCGTCACAAGGCGACTGTGAATGTGCCTAGGTATGATGAAAAGGTGTGCTTGCTGCAG
GTGCACTTCTTGCCGTGTGACGAGGTGGCTGTTTCTACGACTTGTTATGGGCCAAATCATCCAAAATATCCT
GATAAGGCCTATTTCGAGATGAGAAAGTCAACGATATGTCCGGCTAACTGA
Translation:
MQKLMNLICVGNKKSIGLVAFLSTFFGLVACQAGPEVLSAPIMGYNHTPAAINEFTVNGAGGPNLGPYQGDG
SQVCCGVIPKRWNPNLKVIVEWEKDPNPRAVIKRDKYGRLDESDYLRHASSYTRHKATVNVPRYDEKVCLLQ
VHFLPCDEVAVSTTCYGPNHPKYPDKAYFEMRKSTICPAN*
AnnotationID:3967GeneID:3960
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3291
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7922




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3960
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6198
                           PA3291_tr
                           translation of PA3291
                           184
                           97.28
                           98.36
                           0
                           984.0
     

     
     
171766
                           gb|AAG06679.1|AE004751_5
                           (AE004751) hypothetical protein PA3291 [Pseudomonas aeruginosa PAO1]
                           184
                           97.28
                           98.36
                           0
                           984.0
     

     
     
6199
                           PA3292_tr
                           translation of PA3292
                           296
                           39.86
                           46.95
                           123
                           662.0
     

     
     
171767
                           gb|AAG06680.1|AE004751_6
                           (AE004751) hypothetical protein PA3292 [Pseudomonas aeruginosa PAO1]
                           296
                           39.86
                           46.95
                           123
                           662.0
     

     






      

          
GC ORFID: 46962How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3291Glimmer Score: 

          
Start: 3091425Stop: 3090871

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3291 translation of PA3291Homolog Bit Score 383.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAGAAGTTGATGAACTTGATCTGTGTGGGAAATAAAAAGTCCATTGGGCTGGTGGCTTTTCTCAGCACC 
TTCTTTGGGCTGGTGGCATGCCAAGCTGGGCCTGAAGTGCTGTCTGCACCTATCATGGGTTACAACCATACT 
CCGGCGGCGATTAACGAATTTACGGTGAATGGTGCTGGCGGACCGAACTTAGGTCCTTATCAGGGAGATGGT 
AGTCAAGTTTGTTGTGGGGTAATTCCAAAGAGATGGAATCCAAATTTGAAAGTTATTGTGGAATGGGAGAAG 
GATCCCAATCCCCGTGCCGTTATAAAACGAGATAAATATGGGCGGTTGGATGAGAGTGATTATTTGAGGCAT 
GCCTCAAGTTACACCCGTCACAAGGCGACTGTGAATGTGCCTAGGTATGATGAAAAGGTGTGCTTGCTGCAG 
GTGCACTTCTTGCCGTGTGACGAGGTGGCTGTTTCTACGACTTGTTATGGGCCAAATCATCCAAAATATCCT 
GATAAGGCCTATTTCGAGATGAGAAAGTCAACGATATGTCCGGCTAACTGA