ViewGene

Locus Name:
GeneID:
Location:

GeneID: 396

TrivialName: PA14_05110

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05110

PAO1 Ortholog Locus: PA0391

Sequence Length: 1968

Protein Length: 655

Start: 448561

Stop: 446594

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03780.1|AE004476_10 (AE004476) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 653/655 (99%), Positives = 653/655 (99%)

Sequence:

ATGAGCATGGAAAGACTCAGCCATCAAATCGACGCCTACGTCGCCTGGAAGCGCGAGCTGATGCGGGAAATC
ACCCGCTATCGCGGCTGGCTGGAGCGCAGCCGGCTGAACAGCCCGGCGGTCGAGGCCAAGCTCGAACGCGCC
CTGCGCCAACTGCGCGCGGACCACATCACCCTGGCCTTCGTCGGCGAGTTCTCGCGTGGCAAGACCGAGCTG
ATCAACAGCCTGTTCTTCGCCGGCTACGGCCAGCGCATGCTGCCGTCCCACGCCGGGCGCACCACCATGTGC
CCCACCGAGCTGTTCCACGATCCGCGCGCCGAGCGCAGCTACATCCGCCTGCTGCCGATCGAGACGCGCCTG
GCCGACGCCAGCGTCGCCCAGTTCAAGCGCGTGCCGCGCCACTGGGTGAACATTCCGCTGGACACCGGCGAC
CCGGAGGGCATGGCCCAGGCCTTCGCCCAGGTCGCCAAGACCAAGGCGCTGCCGGTGGAACAGGCGATCCAG
CTCGGCTTCCATCCGGATGCCCTGGAAGCCGCCGACGAACCCGACCAAGTGCGCGTCCCGGCCTGGCGCCAC
GCCCTGGTCAACTTCGACCACCCGCTGCTGCGCCAGGGCCTGCGGATCCTCGACACGCCCGGCCTGAACGCC
CTCGGCAGCGAGCCGGAGCTGACCCTGTCGATGCTGCCCAACGCCCAGGCGATCCTGTTCCTGCTGTCCGCC
GACGCCGGTGTCACCGCCTCGGACATGGAAATCTGGCAGAAGTACATCCAGCCACTGCGCGAGGACGGCCAC
AGCAGCCTGTTCGCCGTGCTGAACAAGATCGACGTGCTCTGGGACGACCTCTCCGGCGAGCGCTTCGTACAG
AACGCCATCCGCCTGATCCAGGACGGCACGGCCCGCCAGCTCGGCCTGCAGCGCGGCGACGTGCTGCCGCTG
TCGGCGAAGCAGGCGCTGCTGGCCAAGGTCCGCGGCGAACCGGCGCTGCTCGAACGCAGTCGCCTGGATCGG
CTGGAAGCACTGCTCTGCGAGCGCATCGTCGCGCAGAAGGAAGCGCTGCTGGAGAACGCCGTGCTCGGCCAG
GTCCTCGGCCTGCTGCACAACAGCCAGCATCTGCTGCGCCTGCGCCTGGAGAAGGTCGAGGAACAGCGCGCG
CTGCTCGACGACAAGCAGCGCGACAGCGGCCAACTGCTGTTCGAACTGACCGCGAAGACCAAGGACGACCAC
GGCCGCCACCACCGCCGCCTGCTCAACCTGAAGACCAACCAGCGCCTGCTGCAGCACCAGGGCGCGACGCTG
CGCGAGACGATCCGCAGCGAACGCATGGAACAGCACCTGCAGAAGGTGCGGCGCAACCTCAACGGCAGCCTG
ACCACGGTCGGCATCAACCAGGCGATCCTGGCGTTCTTCCGCGCGGTGGAGCACGACCTCGACAACCTCGAG
CACGAGGCCGGCATGGCCAACCGCATGGTCGCCGCCATCTACCGCCGGCACAACGAGGAGAACCCGCTCTAC
GCCCTCGACGCGCCGCAGCTGCGGGTCCAGCGCTACCAGCGCGAACTGTTGCAACTGAAGAAGAAGGGCGAC
CAGTTCCGCCTGCAGCTGAAGACCGTGCTTACCGAGCAACGCCTGCTGACCCGGCGCTTCTTCGCCACCCTG
GTGCAGGAGGTGGTCGGCCTGCACCAGCGCTTGCGCGAGGAAACCGAGCGCTGGGCCAACGACGCGCTGATG
CCGCTGATGCAGCACACCCTGGAAAACAAACAGTTGCTCGAAAGCCACATGCTCCGCCTCAAGGGCCTGGCC
CAGGAGACCCAGCAGGTACGCCAGCGCAGCCAGGCCTTCGCCGGGTTCGCCGAGGAATTGCAGGAACAGTTG
CGCGAAGCCGGCGACATCCTCCGCCAGTTGCGCCGCCCCTCGCCCCTGCAGCGCCAGGCCAAGGTGGTCAAC
CTGCCCGGCTCGCAGCGCGCCTGA

Translation:

MSMERLSHQIDAYVAWKRELMREITRYRGWLERSRLNSPAVEAKLERALRQLRADHITLAFVGEFSRGKTEL
INSLFFAGYGQRMLPSHAGRTTMCPTELFHDPRAERSYIRLLPIETRLADASVAQFKRVPRHWVNIPLDTGD
PEGMAQAFAQVAKTKALPVEQAIQLGFHPDALEAADEPDQVRVPAWRHALVNFDHPLLRQGLRILDTPGLNA
LGSEPELTLSMLPNAQAILFLLSADAGVTASDMEIWQKYIQPLREDGHSSLFAVLNKIDVLWDDLSGERFVQ
NAIRLIQDGTARQLGLQRGDVLPLSAKQALLAKVRGEPALLERSRLDRLEALLCERIVAQKEALLENAVLGQ
VLGLLHNSQHLLRLRLEKVEEQRALLDDKQRDSGQLLFELTAKTKDDHGRHHRRLLNLKTNQRLLQHQGATL
RETIRSERMEQHLQKVRRNLNGSLTTVGINQAILAFFRAVEHDLDNLEHEAGMANRMVAAIYRRHNEENPLY
ALDAPQLRVQRYQRELLQLKKKGDQFRLQLKTVLTEQRLLTRRFFATLVQEVVGLHQRLREETERWANDALM
PLMQHTLENKQLLESHMLRLKGLAQETQQVRQRSQAFAGFAEELQEQLREAGDILRQLRRPSPLQRQAKVVN
LPGSQRA*

AnnotationID:405 GeneID:396

AnnotatorUID: diggins

Modification Date/Time: 2005-03-25 06:06:51

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0391

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:795

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17937

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33709

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 396_cdd.html

URL:

Homologs By Global Alignment

Gene ID:396

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

662 PA0391_tr translation of PA0391 655 99.69 99.69 0 3300.0

30486 gb|AAG03780.1|AE004476_10 (AE004476) hypothetical protein PA0391 [Pseudomonas aeruginosa PAO1] 655 99.69 99.69 0 3300.0

GC ORFID: `43398`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0391`	Glimmer Score:
Start: `6249903`	Stop: `6247936`
Length: `1968`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0391 translation of PA0391`	Homolog Bit Score `1275.0`
Other Homologs: `t_PA0391 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCATGGAAAGACTCAGCCATCAAATCGACGCCTACGTCGCCTGGAAGCGCGAGCTGATGCGGGAAATC ACCCGCTATCGCGGCTGGCTGGAGCGCAGCCGGCTGAACAGCCCGGCGGTCGAGGCCAAGCTCGAACGCGCC CTGCGCCAACTGCGCGCGGACCACATCACCCTGGCCTTCGTCGGCGAGTTCTCGCGTGGCAAGACCGAGCTG ATCAACAGCCTGTTCTTCGCCGGCTACGGCCAGCGCATGCTGCCGTCCCACGCCGGGCGCACCACCATGTGC CCCACCGAGCTGTTCCACGATCCGCGCGCCGAGCGCAGCTACATCCGCCTGCTGCCGATCGAGACGCGCCTG GCCGACGCCAGCGTCGCCCAGTTCAAGCGCGTGCCGCGCCACTGGGTGAACATTCCGCTGGACACCGGCGAC CCGGAGGGCATGGCCCAGGCCTTCGCCCAGGTCGCCAAGACCAAGGCGCTGCCGGTGGAACAGGCGATCCAG CTCGGCTTCCATCCGGATGCCCTGGAAGCCGCCGACGAACCCGACCAAGTGCGCGTCCCGGCCTGGCGCCAC GCCCTGGTCAACTTCGACCACCCGCTGCTGCGCCAGGGCCTGCGGATCCTCGACACGCCCGGCCTGAACGCC CTCGGCAGCGAGCCGGAGCTGACCCTGTCGATGCTGCCCAACGCCCAGGCGATCCTGTTCCTGCTGTCCGCC GACGCCGGTGTCACCGCCTCGGACATGGAAATCTGGCAGAAGTACATCCAGCCACTGCGCGAGGACGGCCAC AGCAGCCTGTTCGCCGTGCTGAACAAGATCGACGTGCTCTGGGACGACCTCTCCGGCGAGCGCTTCGTACAG AACGCCATCCGCCTGATCCAGGACGGCACGGCCCGCCAGCTCGGCCTGCAGCGCGGCGACGTGCTGCCGCTG TCGGCGAAGCAGGCGCTGCTGGCCAAGGTCCGCGGCGAACCGGCGCTGCTCGAACGCAGTCGCCTGGATCGG CTGGAAGCACTGCTCTGCGAGCGCATCGTCGCGCAGAAGGAAGCGCTGCTGGAGAACGCCGTGCTCGGCCAG GTCCTCGGCCTGCTGCACAACAGCCAGCATCTGCTGCGCCTGCGCCTGGAGAAGGTCGAGGAACAGCGCGCG CTGCTCGACGACAAGCAGCGCGACAGCGGCCAACTGCTGTTCGAACTGACCGCGAAGACCAAGGACGACCAC GGCCGCCACCACCGCCGCCTGCTCAACCTGAAGACCAACCAGCGCCTGCTGCAGCACCAGGGCGCGACGCTG CGCGAGACGATCCGCAGCGAACGCATGGAACAGCACCTGCAGAAGGTGCGGCGCAACCTCAACGGCAGCCTG ACCACGGTCGGCATCAACCAGGCGATCCTGGCGTTCTTCCGCGCGGTGGAGCACGACCTCGACAACCTCGAG CACGAGGCCGGCATGGCCAACCGCATGGTCGCCGCCATCTACCGCCGGCACAACGAGGAGAACCCGCTCTAC GCCCTCGACGCGCCGCAGCTGCGGGTCCAGCGCTACCAGCGCGAACTGTTGCAACTGAAGAAGAAGGGCGAC CAGTTCCGCCTGCAGCTGAAGACCGTGCTTACCGAGCAACGCCTGCTGACCCGGCGCTTCTTCGCCACCCTG GTGCAGGAGGTGGTCGGCCTGCACCAGCGCTTGCGCGAGGAAACCGAGCGCTGGGCCAACGACGCGCTGATG CCGCTGATGCAGCACACCCTGGAAAACAAACAGTTGCTCGAAAGCCACATGCTCCGCCTCAAGGGCCTGGCC CAGGAGACCCAGCAGGTACGCCAGCGCAGCCAGGCCTTCGCCGGGTTCGCCGAGGAATTGCAGGAACAGTTG CGCGAAGCCGGCGACATCCTCCGCCAGTTGCGCCGCCCCTCGCCCCTGCAGCGCCAGGCCAAGGTGGTCAAC CTGCCCGGCTCGCAGCGCGCCTGA