ViewGene
Locus Name:
GeneID:
Location:

GeneID:3959
TrivialName: PA14_05510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05510
PAO1 Ortholog Locus:PA0423
Sequence Length:576
Protein Length:191
Start: 485413
Stop: 485988
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03812.1|AE004479_7 (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/191 (100%), Positives = 191/191 (100%)
Sequence:
ATGCTGAAGAAGACCCTTGCCGCGCTGGCGCTCGGCTCCGCACTGTTCACCGCCGGCCAGGCAATGGCCGCG
GACTACAAGATCGACAAGGAAGGCCAGCACGCCTTCATCGAGTTCCGCATCAAGCACCTGGGCTATAGCTGG
CTGTACGGCCGCTTCAACGACTTCGACGGCAGCTTCACCTTCGACGAGAAGAACCCGTCGGCCGACAAGGTC
AAGGTGACCATCAACACCAACAGCGTGGACACCAACCATGCCGAGCGTGACAAGCACCTGCGCAGCGGTGAT
TTCCTCAACGTCAGCAAGAACCCGACCGCTACCTTCGAATCCACCGAAGTGAAGGCCAACGGCGACAGCGCC
GACATCACCGGCAACCTGACCCTGAACGGCGTGACCAAGCCGGTCACCATCAAGGCCAAGCTGATCGGCCAG
GGCGACGACCCGTGGGGCGGCTACCGTGCCGGCTTCGAAGGCAGCGCCACCCTGAAGCTGAAAGACTTCGGC
ATCAAGATGGACCTCGGCCCGGCATCCCAGGAAGTCGAGCTGCTGCTCTCCGTCGAAGGCATTCGCCAGTAA
Translation:
MLKKTLAALALGSALFTAGQAMAADYKIDKEGQHAFIEFRIKHLGYSWLYGRFNDFDGSFTFDEKNPSADKV
KVTINTNSVDTNHAERDKHLRSGDFLNVSKNPTATFESTEVKANGDSADITGNLTLNGVTKPVTIKAKLIGQ
GDDPWGGYRAGFEGSATLKLKDFGIKMDLGPASQEVELLLSVEGIRQ*
AnnotationID:3966GeneID:3959
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 09:09:58
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic protein
Cell Localization:()
Synonyms:yceI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative secreted protein
Functional Category Confidence Code:5
COGs:pfam04264
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC91120.1| (AJ414152) putative exported protein [Yersinia pestis CO92]
          Length = 192

 Score =  310 bits (793), Expect = 4e-84
 Identities = 147/190 (77%), Positives = 165/190 (86%)

>gb|AAL20087.1| (AE008750) putative secreted protein [Salmonella typhimurium LT2]
          Length = 191

 Score =  302 bits (773), Expect = 8e-82
 Identities = 144/190 (75%), Positives = 160/190 (84%)

>gb|AAO69386.1| (AE016840) putative exported protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 191

 Score =  302 bits (773), Expect = 8e-82
 Identities = 144/190 (75%), Positives = 160/190 (84%)








 
Structural Features:
pfam04264, YceI, YceI like family. E. coli YceI is a base-induced 
periplasmic protein.
CD-Length = 172 residues, 100.0% aligned
Score =  190 bits (483), Expect = 1e-49
Identities = 83/174 (47%), Positives = 111/174 (63%), Gaps = 7/174 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7920




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25063




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33748




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3959_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3959
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6197
                           PA0423_tr
                           translation of PA0423
                           191
                           99.99
                           99.99
                           0
                           986.0
     

     
     
171743
                           gb|AAG03812.1|AE004479_7
                           (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           191
                           99.99
                           99.99
                           0
                           986.0
     

     
     
171744
                           emb|CAC91120.1|
                           (AJ414152) putative exported protein [Yersinia pestis CO92]
                           192
                           76.56
                           85.93
                           1
                           791.0
     

     
     
171745
                           gb|AAL20087.1|
                           (AE008750) putative secreted protein [Salmonella typhimurium LT2]
                           192
                           75.00
                           83.33
                           2
                           773.0
     

     
     
171746
                           gb|AAO69386.1|
                           (AE016840) putative exported protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           192
                           75.00
                           83.33
                           2
                           773.0
     

     






      

          
GC ORFID: 46961How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0423Glimmer Score: 

          
Start: 6286755Stop: 6287330

          
Length: 576


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0423 translation of PA0423Homolog Bit Score 384.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3331 (ORF: BLASTX 243.0), t_PA0423 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAAGAAGACCCTTGCCGCGCTGGCGCTCGGCTCCGCACTGTTCACCGCCGGCCAGGCAATGGCCGCG 
GACTACAAGATCGACAAGGAAGGCCAGCACGCCTTCATCGAGTTCCGCATCAAGCACCTGGGCTATAGCTGG 
CTGTACGGCCGCTTCAACGACTTCGACGGCAGCTTCACCTTCGACGAGAAGAACCCGTCGGCCGACAAGGTC 
AAGGTGACCATCAACACCAACAGCGTGGACACCAACCATGCCGAGCGTGACAAGCACCTGCGCAGCGGTGAT 
TTCCTCAACGTCAGCAAGAACCCGACCGCTACCTTCGAATCCACCGAAGTGAAGGCCAACGGCGACAGCGCC 
GACATCACCGGCAACCTGACCCTGAACGGCGTGACCAAGCCGGTCACCATCAAGGCCAAGCTGATCGGCCAG 
GGCGACGACCCGTGGGGCGGCTACCGTGCCGGCTTCGAAGGCAGCGCCACCCTGAAGCTGAAAGACTTCGGC 
ATCAAGATGGACCTCGGCCCGGCATCCCAGGAAGTCGAGCTGCTGCTCTCCGTCGAAGGCATTCGCCAGTAA