ViewGene

Locus Name:
GeneID:
Location:

GeneID:3958
TrivialName: PA14_00320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00320
PAO1 Ortholog Locus:PA0028
Sequence Length:603
Protein Length:200
Start: 29917
Stop: 30519
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03418.1|AE004442_5 (AE004442) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/200 (98%), Positives = 196/200 (98%)
Sequence:
GTGAAGCGCTGGCTCGGCGTTGCCCTCGGCTGCAGCGGGCTGGCGATCGCCCTGGCCTGCGCCGGCGTGTTG
CTGGCGCCCGCCGATATGGCCGCTTCCTcgtCttCTCCGCCGCCAGCCAGGACGGTTGCGGCGCTGCCCGCG
GTCGACGACCGTCCGCCGCCGCTGGCGCCGGTACGATCGCAAGCGGTGGCACCGGCGTACGAGGCGGAGCCG
CCGGCGGCGGAACTGGATCGCGAGCAGGCGATCCAGTTCATGCAGATGCTGCGCGACGAGGGCGACCCGCGC
AGCCCGCCGCTCGGCGGCCTGCAACCACGCCAGGGCGCGACGGCTCAGGAGCTGGCCGATCCGAAGCAGTAC
CAGGCCTTCGAGGAACGACAGACCCGCGAACTGGTACAGGCCTACACCAGCGGCGTACAGCAGATACCGGAA
ATCCGCGCGCGGATCGAGGCGGCCGAACAGGGTGGCGAGCGCAGCGCCGAGGAAATCGACGAGGCTCGCGCC
GCCCTTGGACAGTTGGAGATGATGCGCGACAAGCTGCAGCGGGAATCGCCGCAACTGCTGCCCGGCGACAGC
GCACCGACATCGCCGGCGGCGCCCTGA
Translation:
MKRWLGVALGCSGLAIALACAGVLLAPADMAASSSSPPPARTVAALPAVDDRPPPLAPVRSQAVAPAYEAEP
PAAELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQYQAFEERQTRELVQAYTSGVQQIPE
IRARIEAAEQGGERSAEEIDEARAALGQLEMMRDKLQRESPQLLPGDSAPTSPAAP*
AnnotationID:3965GeneID:3958
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0028
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:14974
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25061
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3958

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6196 PA0028_tr translation of PA0028 200 98.00 98.00 0 986.0
171742 gb|AAG03418.1|AE004442_5 (AE004442) hypothetical protein PA0028 [Pseudomonas aeruginosa PAO1] 200 97.50 98.00 0 983.0
GC ORFID: 46960How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0028Glimmer Score:
Start: 5831254Stop: 5831856
Length: 603
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0028 translation of PA0028Homolog Bit Score 384.0
Other Homologs: t_PA0028 (ORF: GLIMMER)
GC ORF Sequence
GTGAAGCGCTGGCTCGGCGTTGCCCTCGGCTGCAGCGGGCTGGCGATCGCCCTGGCCTGCGCCGGCGTGTTG
CTGGCGCCCGCCGATATGGCCGCTTCCTcgtCttCTCCGCCGCCAGCCAGGACGGTTGCGGCGCTGCCCGCG
GTCGACGACCGTCCGCCGCCGCTGGCGCCGGTACGATCGCAAGCGGTGGCACCGGCGTACGAGGCGGAGCCG
CCGGCGGCGGAACTGGATCGCGAGCAGGCGATCCAGTTCATGCAGATGCTGCGCGACGAGGGCGACCCGCGC
AGCCCGCCGCTCGGCGGCCTGCAACCACGCCAGGGCGCGACGGCTCAGGAGCTGGCCGATCCGAAGCAGTAC
CAGGCCTTCGAGGAACGACAGACCCGCGAACTGGTACAGGCCTACACCAGCGGCGTACAGCAGATACCGGAA
ATCCGCGCGCGGATCGAGGCGGCCGAACAGGGTGGCGAGCGCAGCGCCGAGGAAATCGACGAGGCTCGCGCC
GCCCTTGGACAGTTGGAGATGATGCGCGACAAGCTGCAGCGGGAATCGCCGCAACTGCTGCCCGGCGACAGC
GCACCGACATCGCCGGCGGCGCCCTGA