ViewGene
Locus Name:
GeneID:
Location:

GeneID:3957
TrivialName: PA14_72790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72790
PAO1 Ortholog Locus:PA5517
Sequence Length:585
Protein Length:194
Start: 6483302
Stop: 6482718
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08902.1|AE004964_5 (AE004964) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/194 (99%), Positives = 193/194 (99%)
Sequence:
ATGTTGCGCCGTCTCTACGACTGGACCCTGCGCCTGGCCGGCCATCCCCGCGCGGAGCTGGCCCTGGGCGGG
GTGACCTTCGCCGAAAGCTCATTCTTCCCGATTCCGCCGGACGCCTTGCTGGTGCCGATGGTCCTGGCCAAC
CGGGCCAAGGCCTGGCGCTACGCGACGATCTGCGCGATCAGCTCGGTGCTGGGCGGCATCGCCGGCTATTTC
ATCGGCTTGCTGCTGTTCGAGAGCGTGGCCATGCCGATCCTGGCGTTCTACGGCTTGCTGGAGAACTTCGAA
CAGGTCGCCGAACGCTACAACGAACTGGGCTGGCTGATGGTGCTGCTGGGCGGCGGCTTCACGCCGCTGCCG
TACAAGGTGATCACCATTACCAGCGGAGTGACCCAGCTCGACCTCTGGCTGTTCGTCGGCCTCAGCCTTGTC
GCCCGCAGCCTGCGCTTCGCCGCTACCTGCGCTTTGCTGTTCTGGGCTGGCCCACGCCTGAAGACCCTGATC
GAGCGGCGCCTGGGCATGGCTTTCGTGCTGATGGCGGTGATGGTGGTCGGTGGGTTGATGCTGGGGAAATAC
GTTCTTTGA
Translation:
MLRRLYDWTLRLAGHPRAELALGGVTFAESSFFPIPPDALLVPMVLANRAKAWRYATICAISSVLGGIAGYF
IGLLLFESVAMPILAFYGLLENFEQVAERYNELGWLMVLLGGGFTPLPYKVITITSGVTQLDLWLFVGLSLV
ARSLRFAATCALLFWAGPRLKTLIERRLGMAFVLMAVMVVGGLMLGKYVL*
AnnotationID:3964GeneID:3957
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:19
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5517
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1238
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1238, COG1238, Predicted membrane protein 
CD-Length = 161 residues, 100.0% aligned
Score =  109 bits (274), Expect = 2e-25
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 4/165 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7916




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33306




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3957_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3957
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6195
                           PA5517_tr
                           translation of PA5517
                           194
                           99.48
                           99.48
                           0
                           985.0
     

     
     
171731
                           gb|AAG08902.1|AE004964_5
                           (AE004964) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           194
                           99.48
                           99.48
                           0
                           985.0
     

     
     
171733
                           dbj|BAC46589.1|
                           (AP005939) blr1324 [Bradyrhizobium japonicum USDA 110]
                           195
                           44.61
                           62.05
                           3
                           404.0
     

     
     
171732
                           emb|CAE30146.1|
                           (BX572608) DedA family [Rhodopseudomonas palustris CGA009]
                           196
                           43.87
                           62.75
                           5
                           413.0
     

     
     
171736
                           gb|AAC16229.1|
                           (AF010496) hypothetical protein [Rhodobacter capsulatus]
                           205
                           43.41
                           55.60
                           22
                           378.0
     

     






      

          
GC ORFID: 46959How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5517Glimmer Score: 

          
Start: 5746991Stop: 5746407

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5517 translation of PA5517Homolog Bit Score 384.0

          
Other Homologs:  t_PA5517 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCGCCGTCTCTACGACTGGACCCTGCGCCTGGCCGGCCATCCCCGCGCGGAGCTGGCCCTGGGCGGG 
GTGACCTTCGCCGAAAGCTCATTCTTCCCGATTCCGCCGGACGCCTTGCTGGTGCCGATGGTCCTGGCCAAC 
CGGGCCAAGGCCTGGCGCTACGCGACGATCTGCGCGATCAGCTCGGTGCTGGGCGGCATCGCCGGCTATTTC 
ATCGGCTTGCTGCTGTTCGAGAGCGTGGCCATGCCGATCCTGGCGTTCTACGGCTTGCTGGAGAACTTCGAA 
CAGGTCGCCGAACGCTACAACGAACTGGGCTGGCTGATGGTGCTGCTGGGCGGCGGCTTCACGCCGCTGCCG 
TACAAGGTGATCACCATTACCAGCGGAGTGACCCAGCTCGACCTCTGGCTGTTCGTCGGCCTCAGCCTTGTC 
GCCCGCAGCCTGCGCTTCGCCGCTACCTGCGCTTTGCTGTTCTGGGCTGGCCCACGCCTGAAGACCCTGATC 
GAGCGGCGCCTGGGCATGGCTTTCGTGCTGATGGCGGTGATGGTGGTCGGTGGGTTGATGCTGGGGAAATAC 
GTTCTTTGA