ViewGene

Locus Name:
GeneID:
Location:

GeneID:3952
TrivialName: PA14_11470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11470
PAO1 Ortholog Locus:PA4050
Sequence Length:516
Protein Length:171
Start: 993817
Stop: 994332
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07437.1|AE004821_10 (AE004821) phosphatidylglycerophosphatase A [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 170/171 (99%)
Sequence:
GTGACTGAGCATCCTGATCAGGCGCCGGCGCAGCCGGTGCCGCCGTCGGTCTGGCGCAATCCCTGGCATTTC
CTCGCCTTCGGCTTCGGCTCCGGCACCCTGCCCAAGGCGCCGGGCACCTGGGGGTCGCTGGTGGCCATCCCG
TTCATCCCGCTGTGGCAGATGCTGCCGGACTGGGGCTACTGGCTGATGCTGGGAGTGACCATGCTGTTCGGC
TTCTGGCTGTGCGGCAAGGTCGCCGACGACCTGCGCGTGCACGACCACGAAGGCATCGTCTGGGACGAGATG
GTCGGCATGTGGATAACCCTCTGGCTGGTGCCGGAGGGCTGGTGGTGGCTGCTGATCGGCTTCGTCGTGTTC
CGCATCGTGGATATTCTCAAACCCTGGCCGATCAGTTGGGTGGACCGCAACGTGCACGGGGGCGTCGGGATC
ATGCTCGACGACGTCCTGGCCGGGGTATTCGCCTGGCTGGTCATGCAGGGTCTAGTCTGGGGATGGGTACAC
TGGCTGGTCTGA
Translation:
MTEHPDQAPAQPVPPSVWRNPWHFLAFGFGSGTLPKAPGTWGSLVAIPFIPLWQMLPDWGYWLMLGVTMLFG
FWLCGKVADDLRVHDHEGIVWDEMVGMWITLWLVPEGWWWLLIGFVVFRIVDILKPWPISWVDRNVHGGVGI
MLDDVLAGVFAWLVMQGLVWGWVHWLV*
AnnotationID:3959GeneID:3952
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:56
Gene Name:pgpA
Confidence Code:2
GeneProduct:phosphatidylglycerophosphatase A
Cell Localization:()
Synonyms:PA4050
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04608,COG1267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
dbj|BAB33894.1| (AP002551) phosphatidylglycerophosphatase [Escherichia coli O157:H7]
Length: 183
PctIdentity: 46.99
PctSimilarity: 61.74
Gaps: 24
Length: 430.0
Structural Features:
gnl|CDD|15905 pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family
represents a family of bacterial
phosphatidylglycerophosphatases (EC:3.1.3.27), known as
PgpA. It appears that bacteria possess several
phosphatidylglycerophosphatases, and thus, PgpA is not
essential in Escherichia coli
Length = 146
Score =  184 bits (469), Expect = 9e-48
Identities = 88/146 (60%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
Genomic Context:
Comment:
ReferenceID:14970
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25049
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34656
Author/Investigator(s): Icho T.
Title: Membrane-bound phosphatases in Escherichia coli: sequence of the pgpA gene.
PubMed: 2846510
MedLine:
Source:
J Bacteriol. 1988 Nov;170(11):5110-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2846510
Homologs By Global Alignment
Gene ID:3952

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6190 PA4050_tr translation of PA4050 171 99.41 99.41 0 990.0
171577 gb|AAG07437.1|AE004821_10 (AE004821) phosphatidylglycerophosphatase A [Pseudomonas aeruginosa PAO1] 171 98.83 99.41 0 987.0
171578 gb|AAN66147.1|AE016242_15 (AE016776) phosphatidylglycerophosphatase A [Pseudomonas putida KT2440] 171 81.87 90.64 4 836.0
171581 emb|CAC92414.1| (AJ414155) phosphatidylglycerophosphatase A [Yersinia pestis CO92] 172 48.83 62.20 12 420.0
171580 gb|AAM84585.1|AE013704_2 (AE013704) phosphatidylglycerophosphatase [Yersinia pestis KIM] 177 47.45 60.45 13 415.0
GC ORFID: 46954How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4050Glimmer Score:
Start: 3960120Stop: 3959605
Length: 516
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4050 translation of PA4050Homolog Bit Score 385.0
Other Homologs: t_PA4050 (ORF: GLIMMER)
GC ORF Sequence
GTGACTGAGCATCCTGATCAGGCGCCGGCGCAGCCGGTGCCGCCGTCGGTCTGGCGCAATCCCTGGCATTTC
CTCGCCTTCGGCTTCGGCTCCGGCACCCTGCCCAAGGCGCCGGGCACCTGGGGGTCGCTGGTGGCCATCCCG
TTCATCCCGCTGTGGCAGATGCTGCCGGACTGGGGCTACTGGCTGATGCTGGGAGTGACCATGCTGTTCGGC
TTCTGGCTGTGCGGCAAGGTCGCCGACGACCTGCGCGTGCACGACCACGAAGGCATCGTCTGGGACGAGATG
GTCGGCATGTGGATAACCCTCTGGCTGGTGCCGGAGGGCTGGTGGTGGCTGCTGATCGGCTTCGTCGTGTTC
CGCATCGTGGATATTCTCAAACCCTGGCCGATCAGTTGGGTGGACCGCAACGTGCACGGGGGCGTCGGGATC
ATGCTCGACGACGTCCTGGCCGGGGTATTCGCCTGGCTGGTCATGCAGGGTCTAGTCTGGGGATGGGTACAC
TGGCTGGTCTGA