ViewGene
Locus Name:
GeneID:
Location:

GeneID:3951
TrivialName: PA14_12730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12730
PAO1 Ortholog Locus:PA3953
Sequence Length:582
Protein Length:193
Start: 1091595
Stop: 1091014
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07340.1|AE004813_7 (AE004813) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/193 (98%), Positives = 191/193 (98%)
Sequence:
ATGAATGACCACGCCCAGCGCTCCGCACGGCCCCAGGTCGCCCTGCTGATCGTCGACCTGCAACGCGGCATG
CAGCGCCACGACCTGCCGCCGCGCAACAATCCCGGCGCCGAGGCGCGCATCGTCGAACTGCTTGCCGCCTGG
CGCGCCGCCGGCTGGCCGGTGGTGCACGTCCGGCACATTTCCCGGCAGCCCGGCTCGCCCTTCGCGCCCGGC
CAGCCCGGCGTGGAGTTCCAGCCAGCGCTGGCGCCGCGCGACGACGAGGCGGTGTTCGAGAAGAACGTTCCC
GACGCCTTCATCAACAGCGGCCTGCAACGCTGGCTCCATGTCCGCGACATCCGCCAGGTGGCGCTCGTCGGG
GTAGCCACGGAGAACTCGGTGGAAGCCAGCGCACGAAGCGCCGGCAACCTCGGCTTCCAGACCTGGGTAGTG
GCCGACGCCTGCTTCACCTTCGCCAAGCCCGATTTCCATGGCACCCCGCGCAGCGCCGACGAGGTACATGCG
ATGGCGTTGGCCAACCTGCACGGCGAGTACGCCGTGGTACTGCGCGCCGCCGAACTGTTGCAGCGCTTGCCG
GCCTGA
Translation:
MNDHAQRSARPQVALLIVDLQRGMQRHDLPPRNNPGAEARIVELLAAWRAAGWPVVHVRHISRQPGSPFAPG
QPGVEFQPALAPRDDEAVFEKNVPDAFINSGLQRWLHVRDIRQVALVGVATENSVEASARSAGNLGFQTWVV
ADACFTFAKPDFHGTPRSADEVHAMALANLHGEYAVVLRAAELLQRLPA*
AnnotationID:3958GeneID:3951
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 14:02:33
Gene Name:
Confidence Code:3
GeneProduct:possible isochorismatase family protein
Cell Localization:()
Synonyms:PA3953
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1335, pfam00857, COG1535
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11051 COG1335, PncA, Amidases related to nicotinamidase
[Secondary metabolites biosynthesis, transport, and catabolism]
Length = 205
Score = 98.4 bits (244), Expect = 1e-21
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 28/204 (13






   
Genomic Context:






   
Comment:


















    ReferenceID:7904




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3951
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6189
                           PA3953_tr
                           translation of PA3953
                           193
                           98.44
                           98.96
                           0
                           990.0
     

     
     
171572
                           gb|AAG07340.1|AE004813_7
                           (AE004813) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           193
                           98.44
                           98.96
                           0
                           990.0
     

     
     
171573
                           gb|AAO55616.1|
                           (AE016863) isochorismatase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           196
                           52.04
                           65.30
                           11
                           511.0
     

     
     
171574
                           gb|AAQ58995.1|
                           (AE016914) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           198
                           43.93
                           58.08
                           6
                           423.0
     

     
     
171575
                           dbj|BAC46551.1|
                           (AP005939) hypothetical isochorismatase family protein [Bradyrhizobium japonicum USDA 110]
                           198
                           38.88
                           54.54
                           14
                           344.0
     

     






      

          
GC ORFID: 46953How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3953Glimmer Score: 

          
Start: 3862343Stop: 3862924

          
Length: 582


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3953 translation of PA3953Homolog Bit Score 385.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene889 (ORF: BLASTX 202.0), t_PA3953 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGACCACGCCCAGCGCTCCGCACGGCCCCAGGTCGCCCTGCTGATCGTCGACCTGCAACGCGGCATG 
CAGCGCCACGACCTGCCGCCGCGCAACAATCCCGGCGCCGAGGCGCGCATCGTCGAACTGCTTGCCGCCTGG 
CGCGCCGCCGGCTGGCCGGTGGTGCACGTCCGGCACATTTCCCGGCAGCCCGGCTCGCCCTTCGCGCCCGGC 
CAGCCCGGCGTGGAGTTCCAGCCAGCGCTGGCGCCGCGCGACGACGAGGCGGTGTTCGAGAAGAACGTTCCC 
GACGCCTTCATCAACAGCGGCCTGCAACGCTGGCTCCATGTCCGCGACATCCGCCAGGTGGCGCTCGTCGGG 
GTAGCCACGGAGAACTCGGTGGAAGCCAGCGCACGAAGCGCCGGCAACCTCGGCTTCCAGACCTGGGTAGTG 
GCCGACGCCTGCTTCACCTTCGCCAAGCCCGATTTCCATGGCACCCCGCGCAGCGCCGACGAGGTACATGCG 
ATGGCGTTGGCCAACCTGCACGGCGAGTACGCCGTGGTACTGCGCGCCGCCGAACTGTTGCAGCGCTTGCCG 
GCCTGA