ViewGene
Locus Name:
GeneID:
Location:

GeneID:3950
TrivialName: PA14_19090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19090
PAO1 Ortholog Locus:PA3480
Sequence Length:567
Protein Length:188
Start: 1647642
Stop: 1648208
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06868.1|AE004769_1 (AE004769) probable deoxycytidine triphosphate deaminase [Pseudomonas aeruginosa PAO1]
Identities = 188/188 (100%), Positives = 188/188 (100%)
Sequence:
ATGACCATCAAATCGGACAAGTGGATTCGCCGCATGGCTCAGGAGCACGGCATGATCGAGCCGTTCGTCGAG
CGCCAGGTGCGCGGCGCGGACGACAGCCGGGTGATTTCCTACGGGGTGTCCAGCTACGGCTACGACGTGCGC
TGCGCCGCCGAATTCAAGGTGTTCACCAACATCCATTCGGCGGTGGTCGATCCGAAGAACTTCGACGAGAAA
AGCTTCGTCGACATCAACAGCGACGTCTGCATCATCCCGCCGAACTCCTTCGCCCTGGCGCGCACCGTCGAG
TACTTCCGCATCCCGCGCGACGTCCTGACCATCTGCCTGGGCAAGAGCACCTACGCGCGTTGCGGCATCATC
GTCAACGTCACCCCGCTGGAGCCGGAGTGGGAAGGCCATGTGACCCTCGAGTTCTCCAATACCACCAACCTG
CCGGCGAAGATCTACGCCAACGAAGGCGTGGCGCAGATGCTCTTCCTGCAATCCGACGAGGCCTGCGAAGTG
TCCTATAAGGACCGTGGCGGCAAATACCAGGGCCAGCGCGGCGTGACCCTGCCAAAAGCCTGA
Translation:
MTIKSDKWIRRMAQEHGMIEPFVERQVRGADDSRVISYGVSSYGYDVRCAAEFKVFTNIHSAVVDPKNFDEK
SFVDINSDVCIIPPNSFALARTVEYFRIPRDVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTNL
PAKIYANEGVAQMLFLQSDEACEVSYKDRGGKYQGQRGVTLPKA*
AnnotationID:3957GeneID:3950
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative deoxycytidine triphosphate deaminase
Cell Localization:()
Synonyms:dcd
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0717
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66725.1|AE016300_10 (AE016778) deoxycytidine triphosphate deaminase [Pseudomonas putida
           KT2440]
          Length = 188

 Score =  356 bits (913), Expect = 5e-98
 Identities = 173/187 (92%), Positives = 178/187 (95%)

>emb|CAE31344.1| (BX640439) deoxycytidine triphosphate deaminase [Bordetella
           bronchiseptica]
          Length = 187

 Score =  318 bits (814), Expect = 1e-86
 Identities = 154/187 (82%), Positives = 165/187 (88%), Gaps = 1/187 (0%)

>gb|AAP05150.1| (AE016995) deoxycytidine triphosphate deaminase [Chlamydophila
           caviae GPIC]
          Length = 190

 Score =  277 bits (709), Expect = 2e-74
 Identities = 127/188 (67%), Positives = 159/188 (84%), Gaps = 2/188 (1%)








 
Structural Features:
COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and metabolism]
CD-Length = 183 residues,  98.9% aligned
Score =  226 bits (577), Expect = 2e-60
Identities = 79/192 (41%), Positives = 111/192 (57%), Gaps = 16/192 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7902




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25045




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32073




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3950_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3950
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6188
                           PA3480_tr
                           translation of PA3480
                           188
                           99.99
                           99.99
                           0
                           989.0
     

     
     
171531
                           gb|AAG06868.1|AE004769_1
                           (AE004769) probable deoxycytidine triphosphate deaminase [Pseudomonas aeruginosa PAO1]
                           188
                           99.99
                           99.99
                           0
                           989.0
     

     
     
171532
                           gb|AAN66725.1|AE016300_10
                           (AE016778) deoxycytidine triphosphate deaminase [Pseudomonas putida KT2440]
                           188
                           92.02
                           94.68
                           0
                           913.0
     

     
     
171533
                           gb|AAO57600.1|
                           (AE016870) deoxycytidine triphosphate deaminase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           188
                           91.48
                           95.21
                           0
                           909.0
     

     
     
171537
                           emb|CAE40169.1|
                           (BX640425) deoxycytidine triphosphate deaminase [Bordetella parapertussis]
                           188
                           81.91
                           87.76
                           1
                           816.0
     

     






      

          
GC ORFID: 46952How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3480Glimmer Score: 

          
Start: 3306291Stop: 3305725

          
Length: 567


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3480 translation of PA3480Homolog Bit Score 385.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6275 (ORF: BLASTX 354.0), t_PA3480 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATCAAATCGGACAAGTGGATTCGCCGCATGGCTCAGGAGCACGGCATGATCGAGCCGTTCGTCGAG 
CGCCAGGTGCGCGGCGCGGACGACAGCCGGGTGATTTCCTACGGGGTGTCCAGCTACGGCTACGACGTGCGC 
TGCGCCGCCGAATTCAAGGTGTTCACCAACATCCATTCGGCGGTGGTCGATCCGAAGAACTTCGACGAGAAA 
AGCTTCGTCGACATCAACAGCGACGTCTGCATCATCCCGCCGAACTCCTTCGCCCTGGCGCGCACCGTCGAG 
TACTTCCGCATCCCGCGCGACGTCCTGACCATCTGCCTGGGCAAGAGCACCTACGCGCGTTGCGGCATCATC 
GTCAACGTCACCCCGCTGGAGCCGGAGTGGGAAGGCCATGTGACCCTCGAGTTCTCCAATACCACCAACCTG 
CCGGCGAAGATCTACGCCAACGAAGGCGTGGCGCAGATGCTCTTCCTGCAATCCGACGAGGCCTGCGAAGTG 
TCCTATAAGGACCGTGGCGGCAAATACCAGGGCCAGCGCGGCGTGACCCTGCCAAAAGCCTGA