ViewGene

Locus Name:
GeneID:
Location:

GeneID: 395

TrivialName: PA14_45930

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_45930

PAO1 Ortholog Locus: PA1433

Sequence Length: 1953

Protein Length: 650

Start: 4082311

Stop: 4084263

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04822.1|AE004573_1 (AE004573) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 647/650 (99%), Positives = 648/650 (99%)

Sequence:

ATGTCACTGCTCAAGCAATTGTTCCTCGCCATCTGCCTGTTCCTCGTCGTCGCCTTCAGCGGCAGCTTCGTC
AGCAGCGTGGAGAACTCCCGCGAGCAGTTGCGCGGCCAGTTGCGCTCCCACGCCCAGGACGCCGCCACCGCC
CTCGGCCTGTCCCTGACGCCACACGTGGACGACCCGGCGATGGTGCAACTGATGGTCAGCTCGATCTTCGAC
AGCGGCTACTTCGCCAGCATCCGGGTGATCGACATCAAGAGCGGCAAGCCGCTGGTCGAGCGCGTGCAAGCG
CATGCCGAGCGTACGGTGCCCGGCTGGTTCGAACGCCTGGTGGATCTCCAGCCCCAGGGTGGCGACGCGCTG
ATCATGCGCGGCTGGGAACAGGCGGCGCGGGTCGAGGTGGTCAGCCATCCGCAATTCGCCCTGGCGCGCCTG
TGGGACAGCGCCCTGGGCAGCCTCTACTGGTTGCTGGCCTGCGGCGCGGTGAGCCTGCTGCTTGGCGGCTGG
CTGCTGCGCCGCCAACTGCGCCCGCTCGACCAGATGGTGCGCCAGGCCCATGCCATCAGCCGGCGGGAATTC
CTCAGCCTGCCCAGGCTGCCGCGCACGCCGGAGCTGCGCCGCGTGGTGCAGGCGATGAACCAGATGGTGGAG
AAACTTCGCACGCTGTTCGCCGAGGAGGCCGCGCGTAGCGACAAGCTACGCGCCCAGGCCTACCAGGACAGT
CTCACCGGCCTGCCCAACCGGCGCCTGTTCGACGCCCGCCTCAACGAACAGCTGGGTGCCGGCGAGCACGAG
CATGCCGGGCAGCTCCTGCTGCTGCGCCTGAACGACCTGAACGGGCTGAACCAGCGTCTCGGCGGGCAACGC
ACGGATGAACTGATCCAGGCGGTCGCCCGCTTGCTGGTCGACTCCTGCGGCCAGCAAGGGCGCGCCGACTGG
CTGCTGGCCCGCAGCCGCGGCGGCGAGTTCGCCGTGCTGGCTCCCGGTTGCTCCCGCGAGCAGGCCGAACGC
CTGGCCGAGGAACTCTGCGAAGGCCTGGAGAACCTTGCCCGCACCGGTGCCAGCGATCTCACGCCGGTCGCC
TATCTCGGTATCAGCGCGTTCGCCGAAGGCGACTCGCCCGCGGATCTCCTGGCCCGTGCCGACCAGGCCCTG
GCCCAGGCCGAAAGCCAGCCCGCCCAGCCCTGGGCGAGCCAGGACGGCACCGCGCTCGCGGCGCTCAACGAC
AGCCAGGACTGGCACGACTGGATCGACCAGGCCCTGACGGAGCGCCGCCTGCTGCTCTATTTCCAGCCGGTG
GTGGACTGCCTGGACACCCAGCGCGTCCTCCACCACAAGGTCCTCGCGCGCCTGCTCGACCCGCAGGCCACG
GCCATCGCCGCCGGGCGCTTCCTGCCCTGGATAGAACGTTTCGGCTGGGCCGCGCGTCTCGACCTGGCGATG
CTCGAACAGAGCCTGGAGCACCTGCGGCGCCATCCACGGCCGCTGGCGCTGAGCCTGTCGGCCGCCAGCGTC
CGCAATGCGCAGGCGTTCGCCCCGCTACTGGCCCTGCTCAAGGCGCATCCGCAGGAGGCGCGCCAGCTGACC
CTGGAACTGGACGAGCGGCACCTGCCAGCCGCGGCCGAACTGGAGCGCCTCAGCCAGGTCCTGCGCGAACTG
GGCTGCGGTCTCGGCCTGCAGCATTTCGGCGGCCGCTTCAGCCTGATCGGCAACCTTACCCATCTGGGGCTG
GCCTACCTCAAGCTGGACGGCTGCTACCTGCACGCCGTCGACCGGGAAGGCGACAAGCGGTTGTTCATCGAA
GCGGTCTATCGCACCACCCACAGCATCGATCTACCGTTGATCGCGGAACAGGTGGAAACCCTCGGTGAACTC
GAAGTACTGCGGGAAATGGGCTTGCGTGGCGCCATGGGACGCCTGTTCGGCAGCCCGGCGCCCTGGTCCGGG
GATGCCTGA

Translation:

MSLLKQLFLAICLFLVVAFSGSFVSSVENSREQLRGQLRSHAQDAATALGLSLTPHVDDPAMVQLMVSSIFD
SGYFASIRVIDIKSGKPLVERVQAHAERTVPGWFERLVDLQPQGGDALIMRGWEQAARVEVVSHPQFALARL
WDSALGSLYWLLACGAVSLLLGGWLLRRQLRPLDQMVRQAHAISRREFLSLPRLPRTPELRRVVQAMNQMVE
KLRTLFAEEAARSDKLRAQAYQDSLTGLPNRRLFDARLNEQLGAGEHEHAGQLLLLRLNDLNGLNQRLGGQR
TDELIQAVARLLVDSCGQQGRADWLLARSRGGEFAVLAPGCSREQAERLAEELCEGLENLARTGASDLTPVA
YLGISAFAEGDSPADLLARADQALAQAESQPAQPWASQDGTALAALNDSQDWHDWIDQALTERRLLLYFQPV
VDCLDTQRVLHHKVLARLLDPQATAIAAGRFLPWIERFGWAARLDLAMLEQSLEHLRRHPRPLALSLSAASV
RNAQAFAPLLALLKAHPQEARQLTLELDERHLPAAAELERLSQVLRELGCGLGLQHFGGRFSLIGNLTHLGL
AYLKLDGCYLHAVDREGDKRLFIEAVYRTTHSIDLPLIAEQVETLGELEVLREMGLRGAMGRLFGSPAPWSG
DA*

AnnotationID:404 GeneID:395

AnnotatorUID: diggins

Modification Date/Time: 2005-02-24 08:08:03

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1433

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN65798.1|AE016207_5 (AE016774) GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 648

 Score =  749 bits (1934), Expect = 0.0
 Identities = 390/647 (60%), Positives = 476/647 (73%), Gaps = 1/647 (0%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:793

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17935

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37414

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 395_cdd.html

URL:

Homologs By Global Alignment

Gene ID:395

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

661 PA1433_tr translation of PA1433 650 99.53 99.69 0 3299.0

30484 gb|AAG04822.1|AE004573_1 (AE004573) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 650 99.53 99.69 0 3299.0

30485 gb|AAN65798.1|AE016207_5 (AE016774) GGDEF domain protein [Pseudomonas putida KT2440] 654 60.09 73.24 10 1941.0

GC ORFID: `43397`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1433`	Glimmer Score:
Start: `871598`	Stop: `869646`
Length: `1953`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1433 translation of PA1433`	Homolog Bit Score `1275.0`
Other Homologs: `t_PA1433 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCACTGCTCAAGCAATTGTTCCTCGCCATCTGCCTGTTCCTCGTCGTCGCCTTCAGCGGCAGCTTCGTC AGCAGCGTGGAGAACTCCCGCGAGCAGTTGCGCGGCCAGTTGCGCTCCCACGCCCAGGACGCCGCCACCGCC CTCGGCCTGTCCCTGACGCCACACGTGGACGACCCGGCGATGGTGCAACTGATGGTCAGCTCGATCTTCGAC AGCGGCTACTTCGCCAGCATCCGGGTGATCGACATCAAGAGCGGCAAGCCGCTGGTCGAGCGCGTGCAAGCG CATGCCGAGCGTACGGTGCCCGGCTGGTTCGAACGCCTGGTGGATCTCCAGCCCCAGGGTGGCGACGCGCTG ATCATGCGCGGCTGGGAACAGGCGGCGCGGGTCGAGGTGGTCAGCCATCCGCAATTCGCCCTGGCGCGCCTG TGGGACAGCGCCCTGGGCAGCCTCTACTGGTTGCTGGCCTGCGGCGCGGTGAGCCTGCTGCTTGGCGGCTGG CTGCTGCGCCGCCAACTGCGCCCGCTCGACCAGATGGTGCGCCAGGCCCATGCCATCAGCCGGCGGGAATTC CTCAGCCTGCCCAGGCTGCCGCGCACGCCGGAGCTGCGCCGCGTGGTGCAGGCGATGAACCAGATGGTGGAG AAACTTCGCACGCTGTTCGCCGAGGAGGCCGCGCGTAGCGACAAGCTACGCGCCCAGGCCTACCAGGACAGT CTCACCGGCCTGCCCAACCGGCGCCTGTTCGACGCCCGCCTCAACGAACAGCTGGGTGCCGGCGAGCACGAG CATGCCGGGCAGCTCCTGCTGCTGCGCCTGAACGACCTGAACGGGCTGAACCAGCGTCTCGGCGGGCAACGC ACGGATGAACTGATCCAGGCGGTCGCCCGCTTGCTGGTCGACTCCTGCGGCCAGCAAGGGCGCGCCGACTGG CTGCTGGCCCGCAGCCGCGGCGGCGAGTTCGCCGTGCTGGCTCCCGGTTGCTCCCGCGAGCAGGCCGAACGC CTGGCCGAGGAACTCTGCGAAGGCCTGGAGAACCTTGCCCGCACCGGTGCCAGCGATCTCACGCCGGTCGCC TATCTCGGTATCAGCGCGTTCGCCGAAGGCGACTCGCCCGCGGATCTCCTGGCCCGTGCCGACCAGGCCCTG GCCCAGGCCGAAAGCCAGCCCGCCCAGCCCTGGGCGAGCCAGGACGGCACCGCGCTCGCGGCGCTCAACGAC AGCCAGGACTGGCACGACTGGATCGACCAGGCCCTGACGGAGCGCCGCCTGCTGCTCTATTTCCAGCCGGTG GTGGACTGCCTGGACACCCAGCGCGTCCTCCACCACAAGGTCCTCGCGCGCCTGCTCGACCCGCAGGCCACG GCCATCGCCGCCGGGCGCTTCCTGCCCTGGATAGAACGTTTCGGCTGGGCCGCGCGTCTCGACCTGGCGATG CTCGAACAGAGCCTGGAGCACCTGCGGCGCCATCCACGGCCGCTGGCGCTGAGCCTGTCGGCCGCCAGCGTC CGCAATGCGCAGGCGTTCGCCCCGCTACTGGCCCTGCTCAAGGCGCATCCGCAGGAGGCGCGCCAGCTGACC CTGGAACTGGACGAGCGGCACCTGCCAGCCGCGGCCGAACTGGAGCGCCTCAGCCAGGTCCTGCGCGAACTG GGCTGCGGTCTCGGCCTGCAGCATTTCGGCGGCCGCTTCAGCCTGATCGGCAACCTTACCCATCTGGGGCTG GCCTACCTCAAGCTGGACGGCTGCTACCTGCACGCCGTCGACCGGGAAGGCGACAAGCGGTTGTTCATCGAA GCGGTCTATCGCACCACCCACAGCATCGATCTACCGTTGATCGCGGAACAGGTGGAAACCCTCGGTGAACTC GAAGTACTGCGGGAAATGGGCTTGCGTGGCGCCATGGGACGCCTGTTCGGCAGCCCGGCGCCCTGGTCCGGG GATGCCTGA