ViewGene
Locus Name:
GeneID:
Location:

GeneID:3948
TrivialName: PA14_26600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26600
PAO1 Ortholog Locus:PA2896
Sequence Length:585
Protein Length:194
Start: 2318037
Stop: 2318621
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06284.1|AE004716_2 (AE004716) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 194/194 (100%), Positives = 194/194 (100%)
Sequence:
ATGCATGCCTCCACCAGCGCCACGACGGCCGCCGGCAGCGACGAAACGCTGCTGGCGCGTTACCGCAAGGGC
GACAGCGCGGCCTTCGAGGTGCTCTACCAGCGCCATCGGCAAGGTCTCTACCGTTTTCTCTGCGGCCTGGCC
GGACAGACCGAACTGGCCGACGAGATCTACCAGGAAACCTGGCTCAGCCTGATCCGCAGCGAGAGCCAGCCG
CAGGGCCGGGCGAGCTTCCGCACCTGGCTCTACCAGATCGCCCGCAACCGCCTGATCGATCATTGGCGCAAG
CATGGCCAGCGCCAGCCGTTGCAGGACAGCTACGACGAACAGTTGCACGCGCAACCCGACCAGGGCGCCGGC
CCCGAGCAGCAGCTCAGCCTGAGCCGCGACGGCGAGCGCTTGCAGAGCGCGCTGGAGACCCTGCCCGAGGAA
CAGCGCGAGGTATTCCTGATGCGCGCCCACGGAGAACTGGAACTGGCCGAGATCGCCACGCTCACCCAGTCG
CCGCTGGAGACGGTGAAGAGCCGTTTCCGCTACGCGGTGCAgaAGCTGCGCCGGCTGCTGGCcgaagaggtg
gcGGTaTGA
Translation:
MHASTSATTAAGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSESQP
QGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDSYDEQLHAQPDQGAGPEQQLSLSRDGERLQSALETLPEE
QREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLLAEEVAV*
AnnotationID:3955GeneID:3948
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:06
Gene Name:
Confidence Code:3
GeneProduct:putative sigma-70 factor, ECF subfamily
Cell Localization:()
Synonyms:PA2896
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1595
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, 
sigma24 homolog [Transcription]
CD-Length = 182 residues,  99.5% aligned
Score =  118 bits (297), Expect = 4e-28
Identities = 70/182 (38%), Positives = 93/182 (51%), Gaps = 1/182 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7898




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36155




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3948_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3948
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6185
                           PA2896_tr
                           translation of PA2896
                           194
                           99.99
                           99.99
                           0
                           990.0
     

     
     
171522
                           gb|AAG06284.1|AE004716_2
                           (AE004716) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
                           194
                           99.99
                           99.99
                           0
                           990.0
     

     
     
171523
                           emb|CAE41521.1|
                           (BX640414) putative Ecf-type RNA polymerase sigma factor [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           210
                           37.61
                           51.90
                           34
                           328.0
     

     






      

          
GC ORFID: 46950How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2896Glimmer Score: 

          
Start: 2635889Stop: 2635305

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2896 translation of PA2896Homolog Bit Score 385.0

          
Other Homologs:  t_PA2896 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGCCTCCACCAGCGCCACGACGGCCGCCGGCAGCGACGAAACGCTGCTGGCGCGTTACCGCAAGGGC 
GACAGCGCGGCCTTCGAGGTGCTCTACCAGCGCCATCGGCAAGGTCTCTACCGTTTTCTCTGCGGCCTGGCC 
GGACAGACCGAACTGGCCGACGAGATCTACCAGGAAACCTGGCTCAGCCTGATCCGCAGCGAGAGCCAGCCG 
CAGGGCCGGGCGAGCTTCCGCACCTGGCTCTACCAGATCGCCCGCAACCGCCTGATCGATCATTGGCGCAAG 
CATGGCCAGCGCCAGCCGTTGCAGGACAGCTACGACGAACAGTTGCACGCGCAACCCGACCAGGGCGCCGGC 
CCCGAGCAGCAGCTCAGCCTGAGCCGCGACGGCGAGCGCTTGCAGAGCGCGCTGGAGACCCTGCCCGAGGAA 
CAGCGCGAGGTATTCCTGATGCGCGCCCACGGAGAACTGGAACTGGCCGAGATCGCCACGCTCACCCAGTCG 
CCGCTGGAGACGGTGAAGAGCCGTTTCCGCTACGCGGTGCAgaAGCTGCGCCGGCTGCTGGCcgaagaggtg 
gcGGTaTGA