ViewGene
Locus Name:
GeneID:
Location:

GeneID:3947
TrivialName: PA14_53410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53410
PAO1 Ortholog Locus:PA0839
Sequence Length:591
Protein Length:196
Start: 4737193
Stop: 4736603
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04228.1|AE004518_9 (AE004518) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 195/196 (99%)
Sequence:
ATGACTAGCAACCGACTTGACAAGCGCGAACTGATCCTGGCCAAGGGCTCCGAGGTCATGACCCGACGTGGC
TACCACGGCACCGGGGTGCTGGAGATCGTCCAGGCCGCGCGCATCCCCAAGGGCTCCTTCTATCACTACTTC
GACAGCAAGGAAGCCTTCGCCCAGCAGGCCCTGGAGCACGTCTACGCGCCGCGCCTGGCGCGCTACGCCCAG
GCCCTCGGCGACAGCCGCTTCAGCCCGCGCGAGCGGGTGCTGCGCTACTACGGCGAGCTGCTGGAGCACTTC
GCCCGCCAGGAAAAGCCCGAATACCACTGCTTCATCGGCAGCCTGAGCTTCGAGATGGCCGAGCTGTCGCCG
CCGATCGCGGCCACGGTCGAGTCGATCCTGCAGGCTTCCGCGCAAATCCTCCAGGACTGCCTGGAGCAGGCG
CGCGAGGCCGGCGAACTGGCCGCCGACGAGGACTGCGCGAGCCTGGCCGGCTTCATCGGCTTCGCCTGGCAG
GGCGCCCTGGCGCGCTTCAAGGTCGGCGCCGGCCTCGCTCCGTTGAATGCTTTCATGTCGCGCCTGGAACTG
CTGCTCCGCGCCTGA
Translation:
MTSNRLDKRELILAKGSEVMTRRGYHGTGVLEIVQAARIPKGSFYHYFDSKEAFAQQALEHVYAPRLARYAQ
ALGDSRFSPRERVLRYYGELLEHFARQEKPEYHCFIGSLSFEMAELSPPIAATVESILQASAQILQDCLEQA
REAGELAADEDCASLAGFIGFAWQGALARFKVGAGLAPLNAFMSRLELLLRA*
AnnotationID:3954GeneID:3947
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:02
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0839
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription].  Score: 55.4, 9e-09
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family. Score: 47.7, 2e-06






   
Genomic Context:






   
Comment:


















    ReferenceID:7896




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3947
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6184
                           PA0839_tr
                           translation of PA0839
                           196
                           99.48
                           99.48
                           0
                           989.0
     

     
     
171521
                           gb|AAG04228.1|AE004518_9
                           (AE004518) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           196
                           99.48
                           99.48
                           0
                           989.0
     

     






      

          
GC ORFID: 46949How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0839Glimmer Score: 

          
Start: 216714Stop: 217304

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0839 translation of PA0839Homolog Bit Score 385.0

          
Other Homologs:  t_PA0839 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTAGCAACCGACTTGACAAGCGCGAACTGATCCTGGCCAAGGGCTCCGAGGTCATGACCCGACGTGGC 
TACCACGGCACCGGGGTGCTGGAGATCGTCCAGGCCGCGCGCATCCCCAAGGGCTCCTTCTATCACTACTTC 
GACAGCAAGGAAGCCTTCGCCCAGCAGGCCCTGGAGCACGTCTACGCGCCGCGCCTGGCGCGCTACGCCCAG 
GCCCTCGGCGACAGCCGCTTCAGCCCGCGCGAGCGGGTGCTGCGCTACTACGGCGAGCTGCTGGAGCACTTC 
GCCCGCCAGGAAAAGCCCGAATACCACTGCTTCATCGGCAGCCTGAGCTTCGAGATGGCCGAGCTGTCGCCG 
CCGATCGCGGCCACGGTCGAGTCGATCCTGCAGGCTTCCGCGCAAATCCTCCAGGACTGCCTGGAGCAGGCG 
CGCGAGGCCGGCGAACTGGCCGCCGACGAGGACTGCGCGAGCCTGGCCGGCTTCATCGGCTTCGCCTGGCAG 
GGCGCCCTGGCGCGCTTCAAGGTCGGCGCCGGCCTCGCTCCGTTGAATGCTTTCATGTCGCGCCTGGAACTG 
CTGCTCCGCGCCTGA