ViewGene
Locus Name:
GeneID:
Location:

GeneID:3946
TrivialName: PA14_01270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01270
PAO1 Ortholog Locus:PA0104
Sequence Length:597
Protein Length:198
Start: 124433
Stop: 125029
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03494.1|AE004449_3 (AE004449) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 192/198 (96%), Positives = 194/198 (97%)
Sequence:
ATGGTGGACGGCTTCGTCCAGCCGGTTGGCGAAGGGCTCGCCGATCAACTGGTGGGCCACCAGGTTGGCCAC
GGTGGTGTCCAGTGGGATCAGCGCCTGGCCGAAGTGGGCGATGTAGCGGTCGTTCACTTCTTCCACCAGGCG
GTGCGCCAGGTAGGCCTCATCGAGCAGGGCGTCGAGGCCGTCGTGGCCGGCGAGCAACGCCGGCGGGGTGAG
GAAGAACTGCTCGGCGACCTTCAGCACCGGCTTGATCCGTTCCTCGATGCCGGCTTCGCGGGCCACGCTGTT
GGCGGCGTCGAGCAGGTCCGGTACCTGTTCGACGTAGGCGTGGACGAAGCGGGTGAGTATGTCTTCCGTGTT
CTCGCCTTGCGGCTGGATGGTGCGATGCAGGCGGGGCAGGCAGCTGGCTATCAGATCAGCCAGGTGACCGTG
GCGGGCTTCGCTGAGGTGCGCCTGCTGGATGAGTTCACGGAGGGCAGCGGTGTTCATGGGTTCTCCCATACA
ACGGGGATGGTGAAGAAGAGGAGAAACATAGCCGGCGGCGCGCGCCGGCTAAGACGCGATTGTCATAATCGC
TTCGTGGTTATGCGAGGATGA
Translation:
MVDGFVQPVGEGLADQLVGHQVGHGGVQWDQRLAEVGDVAVVHFFHQAVRQVGLIEQGVEAVVAGEQRRRGE
EELLGDLQHRLDPFLDAGFAGHAVGGVEQVRYLFDVGVDEAGEYVFRVLALRLDGAMQAGQAAGYQISQVTV
AGFAEVRLLDEFTEGSGVHGFSHTTGMVKKRRNIAGGARRLRRDCHNRFVVMRG*
AnnotationID:3953GeneID:3946
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0104
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7894




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25037




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3946
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6183
                           PA0104_tr
                           translation of PA0104
                           198
                           96.96
                           97.97
                           0
                           992.0
     

     
     
171519
                           gb|AAG03494.1|AE004449_3
                           (AE004449) hypothetical protein PA0104 [Pseudomonas aeruginosa PAO1]
                           198
                           96.96
                           97.97
                           0
                           992.0
     

     
     
171520
                           gb|AAN65736.1|AE016199_8
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           296
                           27.02
                           35.47
                           98
                           316.0
     

     






      

          
GC ORFID: 46948How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0104Glimmer Score: 

          
Start: 5925772Stop: 5926368

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0104 translation of PA0104Homolog Bit Score 386.0

          
Other Homologs:  t_PA0104 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGGACGGCTTCGTCCAGCCGGTTGGCGAAGGGCTCGCCGATCAACTGGTGGGCCACCAGGTTGGCCAC 
GGTGGTGTCCAGTGGGATCAGCGCCTGGCCGAAGTGGGCGATGTAGCGGTCGTTCACTTCTTCCACCAGGCG 
GTGCGCCAGGTAGGCCTCATCGAGCAGGGCGTCGAGGCCGTCGTGGCCGGCGAGCAACGCCGGCGGGGTGAG 
GAAGAACTGCTCGGCGACCTTCAGCACCGGCTTGATCCGTTCCTCGATGCCGGCTTCGCGGGCCACGCTGTT 
GGCGGCGTCGAGCAGGTCCGGTACCTGTTCGACGTAGGCGTGGACGAAGCGGGTGAGTATGTCTTCCGTGTT 
CTCGCCTTGCGGCTGGATGGTGCGATGCAGGCGGGGCAGGCAGCTGGCTATCAGATCAGCCAGGTGACCGTG 
GCGGGCTTCGCTGAGGTGCGCCTGCTGGATGAGTTCACGGAGGGCAGCGGTGTTCATGGGTTCTCCCATACA 
ACGGGGATGGTGAAGAAGAGGAGAAACATAGCCGGCGGCGCGCGCCGGCTAAGACGCGATTGTCATAATCGC 
TTCGTGGTTATGCGAGGATGA