ViewGene
Locus Name:
GeneID:
Location:

GeneID:3945
TrivialName: PA14_01200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01200
PAO1 Ortholog Locus:
Sequence Length:1092
Protein Length:363
Start: 118146
Stop: 119237
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03489.1|AE004448_8 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 217/388 (55%), Positives = 251/388 (64%), Gaps = 58/388 (14%)
Sequence:
ATGGCCAACGAGGTGTACGCCAACAACATGGAGATCTCCTGCAAGGCGGCGAGCGGCAAGTCCATCGCGGCC
TTCCCGGATGTCTGCTTCACCCCGCCGCAGGCGCCGCCGACGCCGTTGGGGGTACCGATCCCCTACCCCAAT
ACCGGCCTGTCCAAGGACACCACCAAAGGCACCCGGACCATTCGCATCACCCGCAAGGAGGTGATGCTGAAG
AACAAGAGCTACTACAAGACCAGCTACGGCGACGAGCCGGGGCGGGCGCCGAAGAAGGGCATCGTCACCAGC
AAAATCAAGGGCAAGGTGTACTTCACCTCCTGGTCGATGAACGTCAAGTTCGAAAGCAAGAACGTGGTTCGC
CACCTCGACCTGACCACCCACAACCACGCGTCCTTTCCCGGCAATACGCCACCCTGGATCTATTCCGACAAA
CAGACCATGGCGCTGCACAAGGATTGCGAGGAGGACGTGCAGAAGGAGAAGACGGCTTGCGCCGGCAAGAAG
ACCAAGGCGGAGAAGTGCGCCGACGATGGCTGCAAGAAAGCCAGGAAATGCCTGTTGGTTTCCTACAACCAG
GGCAAGAGAAAGAGCGGCATCGGCTGCTGTCCCGGCGAACAGCCGCACCACCTGATCGAGGCGCATTGCTTC
TACGAGGTGGGCAAGCGCGGCGAGGGCGACAGCATGTTCTTCAACGCGCCTGCGGGCAAGCAGCCGTACAAG
GACACCGAGTCGCCCTGCGTGTGCGCCGAAGGGCCCCGGCATGCGGGCGAACACGGCCAGTACCATGCCTTC
CAGCAGGCTCTGGAGGCCAAGCACCACGAGAAGTCCGGCGGCTGGACCTACGCGGATGCGCGCAACGCCGGG
GTCAAGGCGAACAAGGCGGTGAACGAACAGTGCAACGACAAGTGCACCGCGGCTCAGTTGGACAGTTATCAC
AAGGAACGCTGTGGGGTGACCGACAGCACGCCGCTCAGGACCGACCCGCAGGCGGGGACACGCTCGGTGGGT
ACGCTGGACGCCAAGCAAACCGCTGCCCTGCAGGCGGAAATCGGGGCGATGAGCGGCATGTCGGCGGCCGGC
GGTTCACTGTAA
Translation:
MANEVYANNMEISCKAASGKSIAAFPDVCFTPPQAPPTPLGVPIPYPNTGLSKDTTKGTRTIRITRKEVMLK
NKSYYKTSYGDEPGRAPKKGIVTSKIKGKVYFTSWSMNVKFESKNVVRHLDLTTHNHASFPGNTPPWIYSDK
QTMALHKDCEEDVQKEKTACAGKKTKAEKCADDGCKKARKCLLVSYNQGKRKSGIGCCPGEQPHHLIEAHCF
YEVGKRGEGDSMFFNAPAGKQPYKDTESPCVCAEGPRHAGEHGQYHAFQQALEAKHHEKSGGWTYADARNAG
VKANKAVNEQCNDKCTAAQLDSYHKERCGVTDSTPLRTDPQAGTRSVGTLDAKQTAALQAEIGAMSGMSAAG
GSL*
AnnotationID:3952GeneID:3945
AnnotatorUID: danlee
Modification Date/Time: 2005-10-21 12:12:32
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15595297|ref|NP_248789.1|  hypothetical protein PA0099 [Pseudomonas aeruginosa PAO1]
gi|11348770|pir||H83633  hypothetical protein PA0099 [imported] - Pseudomonas aeruginosa 
            (strain PAO1)
     Length=386
     Score =  386 bits (992),  Expect = 6e-106
     Identities = 217/388 (55%), Positives = 251/388 (64%), Gaps = 58/388 (14%)

gi|70730367|ref|YP_260106.1|  hypothetical protein PFL_3000 [Pseudomonas fluorescens Pf-5]
gi|68344666|gb|AAY92272.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
     Length=361
     Score =  303 bits (777),  Expect = 5e-81
     Identities = 165/339 (48%), Positives = 204/339 (60%), Gaps = 45/339 (13%)






 
Structural Features:






   
Genomic Context:






   
Comment:
the first one third of the sequence is nearly identical to PAO1 PA099 ,
then the remaining region contains gaps and low similarity.


















    ReferenceID:7892




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25035




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3945
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6182
                           PA0099_tr
                           translation of PA0099
                           411
                           53.28
                           62.53
                           73
                           1034.0
     

     
     
171518
                           gb|AAG03489.1|AE004448_8
                           (AE004448) hypothetical protein PA0099 [Pseudomonas aeruginosa PAO1]
                           411
                           53.28
                           62.53
                           73
                           1034.0
     

     






      

          
GC ORFID: 46947How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0099Glimmer Score: 

          
Start: 5919485Stop: 5920576

          
Length: 1092


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0099 translation of PA0099Homolog Bit Score 386.0

          
Other Homologs:  t_PA0099 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAACGAGGTGTACGCCAACAACATGGAGATCTCCTGCAAGGCGGCGAGCGGCAAGTCCATCGCGGCC 
TTCCCGGATGTCTGCTTCACCCCGCCGCAGGCGCCGCCGACGCCGTTGGGGGTACCGATCCCCTACCCCAAT 
ACCGGCCTGTCCAAGGACACCACCAAAGGCACCCGGACCATTCGCATCACCCGCAAGGAGGTGATGCTGAAG 
AACAAGAGCTACTACAAGACCAGCTACGGCGACGAGCCGGGGCGGGCGCCGAAGAAGGGCATCGTCACCAGC 
AAAATCAAGGGCAAGGTGTACTTCACCTCCTGGTCGATGAACGTCAAGTTCGAAAGCAAGAACGTGGTTCGC 
CACCTCGACCTGACCACCCACAACCACGCGTCCTTTCCCGGCAATACGCCACCCTGGATCTATTCCGACAAA 
CAGACCATGGCGCTGCACAAGGATTGCGAGGAGGACGTGCAGAAGGAGAAGACGGCTTGCGCCGGCAAGAAG 
ACCAAGGCGGAGAAGTGCGCCGACGATGGCTGCAAGAAAGCCAGGAAATGCCTGTTGGTTTCCTACAACCAG 
GGCAAGAGAAAGAGCGGCATCGGCTGCTGTCCCGGCGAACAGCCGCACCACCTGATCGAGGCGCATTGCTTC 
TACGAGGTGGGCAAGCGCGGCGAGGGCGACAGCATGTTCTTCAACGCGCCTGCGGGCAAGCAGCCGTACAAG 
GACACCGAGTCGCCCTGCGTGTGCGCCGAAGGGCCCCGGCATGCGGGCGAACACGGCCAGTACCATGCCTTC 
CAGCAGGCTCTGGAGGCCAAGCACCACGAGAAGTCCGGCGGCTGGACCTACGCGGATGCGCGCAACGCCGGG 
GTCAAGGCGAACAAGGCGGTGAACGAACAGTGCAACGACAAGTGCACCGCGGCTCAGTTGGACAGTTATCAC 
AAGGAACGCTGTGGGGTGACCGACAGCACGCCGCTCAGGACCGACCCGCAGGCGGGGACACGCTCGGTGGGT 
ACGCTGGACGCCAAGCAAACCGCTGCCCTGCAGGCGGAAATCGGGGCGATGAGCGGCATGTCGGCGGCCGGC 
GGTTCACTGTAA