ViewGene
Locus Name:
GeneID:
Location:

GeneID:3944
TrivialName: PA14_26140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26140
PAO1 Ortholog Locus:PA2931
Sequence Length:591
Protein Length:196
Start: 2282147
Stop: 2282737
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06319.1|AE004719_5 (AE004719) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 196/196 (100%)
Sequence:
ATGGCAACGCGAGGCAGGCCACGGGCATTCGACAGGGACACCGCCCTGCAGCGAGCCATGGACGTGTTCTGG
GTGCGTGGCTACGAAGGCGCTTCGCTGGCGGCCCTGACCGAGGCGATGGAAATCAGGCCGCCCAGCCTGTAC
GCCGCCTTCGGCAGCAAGGAAGGGCTGTTCCGCGAAGCCCTGGCCCACTATCTCGGCCAGCACGGCCGCTAT
CGCCGGGATGTCCTCGATGGCGCGCCGAGCGCCCGCGAGGGCGTGGCCGAGCTGCTCCGCGAGACCGTCGCG
CGCTTCTGTTCCGATGAGTTCCCGCGCGGTTGCCTGGTGGTGCTCGCGGCGCTGACCGGAACCCCGGAAAGC
GAGGCGGTGCGGGACGCGTTGAGCGCCGAGCGCGGCGAGTCGATCCGCCTGTTCCGTGAGCGCATGCGGCGC
GGCATCGCTGACGGCGACCTGGCGGCGGACACCGACATGGAGGAGTTGGCGACCTTCTATGCCACCGTGCTG
TTCGGCCTCAGCGTGCAGGCCAAGGACCGGGTGCCTTGCGAGCGCCTGCTGGCGGTGGTCGAACGGGCGCTG
CGCGCCTGGCCCTGA
Translation:
MATRGRPRAFDRDTALQRAMDVFWVRGYEGASLAALTEAMEIRPPSLYAAFGSKEGLFREALAHYLGQHGRY
RRDVLDGAPSAREGVAELLRETVARFCSDEFPRGCLVVLAALTGTPESEAVRDALSAERGESIRLFRERMRR
GIADGDLAADTDMEELATFYATVLFGLSVQAKDRVPCERLLAVVERALRAWP*
AnnotationID:3951GeneID:3944
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 10:10:07
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2931
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB48101.1| (AP002995) probable transcriptional regulator [Mesorhizobium loti]
          Length = 204

 Score =  179 bits (454), Expect = 9e-45
 Identities = 92/195 (47%), Positives = 121/195 (62%)

>emb|CAE31700.1| (BX640440) putative TetR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 206

 Score =  173 bits (438), Expect = 6e-43
 Identities = 90/192 (46%), Positives = 119/192 (61%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7890




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25033




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36105




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3944_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3944
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6180
                           PA2931_tr
                           translation of PA2931
                           196
                           99.48
                           99.99
                           0
                           991.0
     

     
     
171501
                           gb|AAG06319.1|AE004719_5
                           (AE004719) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           196
                           99.48
                           99.99
                           0
                           991.0
     

     
     
171505
                           emb|CAE34515.1|
                           (BX640449) putative TetR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           207
                           45.41
                           57.48
                           12
                           422.0
     

     
     
171506
                           emb|CAE38988.1|
                           (BX640434) putative TetR-family transcriptional regulator [Bordetella parapertussis]
                           207
                           45.41
                           57.48
                           12
                           422.0
     

     
     
6181
                           PA2484_tr
                           translation of PA2484
                           205
                           45.36
                           61.46
                           10
                           443.0
     

     






      

          
GC ORFID: 46946How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2931Glimmer Score: 

          
Start: 2671778Stop: 2671188

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2931 translation of PA2931Homolog Bit Score 386.0

          
Other Homologs:  t_PA2484 (ORF: BLASTX 174.0), t_PA2931 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAACGCGAGGCAGGCCACGGGCATTCGACAGGGACACCGCCCTGCAGCGAGCCATGGACGTGTTCTGG 
GTGCGTGGCTACGAAGGCGCTTCGCTGGCGGCCCTGACCGAGGCGATGGAAATCAGGCCGCCCAGCCTGTAC 
GCCGCCTTCGGCAGCAAGGAAGGGCTGTTCCGCGAAGCCCTGGCCCACTATCTCGGCCAGCACGGCCGCTAT 
CGCCGGGATGTCCTCGATGGCGCGCCGAGCGCCCGCGAGGGCGTGGCCGAGCTGCTCCGCGAGACCGTCGCG 
CGCTTCTGTTCCGATGAGTTCCCGCGCGGTTGCCTGGTGGTGCTCGCGGCGCTGACCGGAACCCCGGAAAGC 
GAGGCGGTGCGGGACGCGTTGAGCGCCGAGCGCGGCGAGTCGATCCGCCTGTTCCGTGAGCGCATGCGGCGC 
GGCATCGCTGACGGCGACCTGGCGGCGGACACCGACATGGAGGAGTTGGCGACCTTCTATGCCACCGTGCTG 
TTCGGCCTCAGCGTGCAGGCCAAGGACCGGGTGCCTTGCGAGCGCCTGCTGGCGGTGGTCGAACGGGCGCTG 
CGCGCCTGGCCCTGA