ViewGene

Locus Name:
GeneID:
Location:

GeneID:3943
TrivialName: PA14_44580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44580
PAO1 Ortholog Locus:PA1536
Sequence Length:540
Protein Length:179
Start: 3968619
Stop: 3969158
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04925.1|AE004582_3 (AE004582) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 175/179 (97%), Positives = 176/179 (98%)
Sequence:
ATGAACCCTCCCCTTCCGCACTTCCGCTACCATCCCGAACCGCTCGCCAGCGGCAGCATCGAGGCTTCCGCC
GCCACCTGCCAGTGCTGTGGCAAGGCTCGTGGCTACGTCTACACCGGTTCGCCCTATTCCCGCCACGAGTTA
CCGCCCGGCAGCCTTTGCCCCTGGTGCATAGCCGACGGCAGCGCGGCCGCCCGCTACGAAGCGAGCTTTTCC
GACGATTATCCGCTGCTCGACGCCGGCGTCGCCGCGAATATCGTCACCGAAGTCTGCGAGCGCACGCCCGGC
TACGCCTCCTGGCAGCAGGAGCGCTGGCTGGTTTGCTGCGAGGATGCCTGCGCCTTTCGCGGCGACGCGGGG
CGTGAGGAAATCGGGCAACTGGGAGCCGAGGGCCTGGCGCAGCGCTTCGCCGATTTCGCCTGGCCGGCTAGC
ACCTGGCAACGCCTCGTCGACGCCTATACGCCCGGCGGCAATCCGGCCATCTACCGCTTCGACTGCCTGCAC
TGTGGCCAGGCGCATTACGACCTGGACTTCACCTGA
Translation:
MNPPLPHFRYHPEPLASGSIEASAATCQCCGKARGYVYTGSPYSRHELPPGSLCPWCIADGSAAARYEASFS
DDYPLLDAGVAANIVTEVCERTPGYASWQQERWLVCCEDACAFRGDAGREEIGQLGAEGLAQRFADFAWPAS
TWQRLVDAYTPGGNPAIYRFDCLHCGQAHYDLDFT*
AnnotationID:3950GeneID:3943
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1536
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7888
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25031
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37301
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3943_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3943

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6179 PA1536_tr translation of PA1536 179 97.76 98.32 0 991.0
171496 gb|AAG04925.1|AE004582_3 (AE004582) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 179 97.76 98.32 0 991.0
171497 gb|AAN53973.1|AE015535_1 (AE015535) conserved hypothetical protein [Shewanella oneidensis MR-1] 179 46.92 62.56 4 459.0
171498 gb|AAK46637.1| (AE007077) conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] 188 38.29 51.06 10 354.0
171499 emb|CAD97178.1| (BX248342) CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis subsp. bovis AF2122/97] 213 33.80 45.07 35 354.0
GC ORFID: 46945How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1536Glimmer Score:
Start: 985290Stop: 984751
Length: 540
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1536 translation of PA1536Homolog Bit Score 386.0
Other Homologs: t_PA1536 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCCTCCCCTTCCGCACTTCCGCTACCATCCCGAACCGCTCGCCAGCGGCAGCATCGAGGCTTCCGCC
GCCACCTGCCAGTGCTGTGGCAAGGCTCGTGGCTACGTCTACACCGGTTCGCCCTATTCCCGCCACGAGTTA
CCGCCCGGCAGCCTTTGCCCCTGGTGCATAGCCGACGGCAGCGCGGCCGCCCGCTACGAAGCGAGCTTTTCC
GACGATTATCCGCTGCTCGACGCCGGCGTCGCCGCGAATATCGTCACCGAAGTCTGCGAGCGCACGCCCGGC
TACGCCTCCTGGCAGCAGGAGCGCTGGCTGGTTTGCTGCGAGGATGCCTGCGCCTTTCGCGGCGACGCGGGG
CGTGAGGAAATCGGGCAACTGGGAGCCGAGGGCCTGGCGCAGCGCTTCGCCGATTTCGCCTGGCCGGCTAGC
ACCTGGCAACGCCTCGTCGACGCCTATACGCCCGGCGGCAATCCGGCCATCTACCGCTTCGACTGCCTGCAC
TGTGGCCAGGCGCATTACGACCTGGACTTCACCTGA