ViewGene
Locus Name:
GeneID:
Location:

GeneID:3941
TrivialName: PA14_11230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11230
PAO1 Ortholog Locus:PA4071
Sequence Length:579
Protein Length:192
Start: 976966
Stop: 977544
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07458.1|AE004823_4 (AE004823) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/192 (98%), Positives = 190/192 (98%)
Sequence:
ATGTCCGCCTGGGCGCGCTGGTATGAGCGCCACTGGCGCGACTGGCGGCCAGCCGCCTATCGCCCCGGAGCC
ACCCTGGCCCTGGTGCGGCGCAACCTGGCTGCGTGCGACGGCGAGGCGCAGGACGGCAGGCTGTTGCTGCGT
ACGAAAGAGCTGAGCCTCGAGGTTCGCGAGCGGGTCCAGGCGCACCTGTTCATGCATATCGTCAGCACCGAG
TTCAGCCTGTTCGTGGCGGCGCCCGGGGGGCCGCCGGCCAGCCTGGAGCTGCGTCACGCCGGTTGCTTGCGG
CGTCGCGGCATCCTTTGCAAGGTGCGCCGCGGGAGCGGGCTCGAGCCGTTGCGGGAGGCCTTGCAGGGGGGC
GACCGGGCCTTGCTGGAGCAGCTCATGCCGCTGGACTTCCGGAGCTTGCGCCTCTGCCGCGACGACAGGGGC
TGGACCGTGAGCCTGGAACACCTGGGGGCGTGCGAGGTGGTCAACCGCTTCCCCGCCTATCGCCGCTACATC
CCTCTGGTCGCCGAGCAGCGCCTGGCCCTGCTGGGCGCCTTCGCCCAATTGCAGCGCCTGCTTTCTCCCGCC
TGA
Translation:
MSAWARWYERHWRDWRPAAYRPGATLALVRRNLAACDGEAQDGRLLLRTKELSLEVRERVQAHLFMHIVSTE
FSLFVAAPGGPPASLELRHAGCLRRRGILCKVRRGSGLEPLREALQGGDRALLEQLMPLDFRSLRLCRDDRG
WTVSLEHLGACEVVNRFPAYRRYIPLVAEQRLALLGAFAQLQRLLSPA*
AnnotationID:3948GeneID:3941
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4071
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7884




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25027




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3941
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6177
                           PA4071_tr
                           translation of PA4071
                           192
                           98.95
                           98.95
                           0
                           995.0
     

     
     
171492
                           gb|AAG07458.1|AE004823_4
                           (AE004823) hypothetical protein PA4071 [Pseudomonas aeruginosa PAO1]
                           192
                           98.95
                           98.95
                           0
                           995.0
     

     






      

          
GC ORFID: 46943How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4071Glimmer Score: 

          
Start: 3976971Stop: 3976393

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4071 translation of PA4071Homolog Bit Score 387.0

          
Other Homologs:  t_PA4071 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCTGGGCGCGCTGGTATGAGCGCCACTGGCGCGACTGGCGGCCAGCCGCCTATCGCCCCGGAGCC 
ACCCTGGCCCTGGTGCGGCGCAACCTGGCTGCGTGCGACGGCGAGGCGCAGGACGGCAGGCTGTTGCTGCGT 
ACGAAAGAGCTGAGCCTCGAGGTTCGCGAGCGGGTCCAGGCGCACCTGTTCATGCATATCGTCAGCACCGAG 
TTCAGCCTGTTCGTGGCGGCGCCCGGGGGGCCGCCGGCCAGCCTGGAGCTGCGTCACGCCGGTTGCTTGCGG 
CGTCGCGGCATCCTTTGCAAGGTGCGCCGCGGGAGCGGGCTCGAGCCGTTGCGGGAGGCCTTGCAGGGGGGC 
GACCGGGCCTTGCTGGAGCAGCTCATGCCGCTGGACTTCCGGAGCTTGCGCCTCTGCCGCGACGACAGGGGC 
TGGACCGTGAGCCTGGAACACCTGGGGGCGTGCGAGGTGGTCAACCGCTTCCCCGCCTATCGCCGCTACATC 
CCTCTGGTCGCCGAGCAGCGCCTGGCCCTGCTGGGCGCCTTCGCCCAATTGCAGCGCCTGCTTTCTCCCGCC 
TGA