ViewGene
Locus Name:
GeneID:
Location:

GeneID:394
TrivialName: PA14_60080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60080
PAO1 Ortholog Locus:
Sequence Length:1932
Protein Length:643
Start: 5350432
Stop: 5352363
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84135.1| (AY273869) pathogenesis-related protein [Pseudomonas aeruginosa]
Identities = 642/643 (99%), Positives = 642/643 (99%)
Sequence:
ATGAGCAGACGAATTGATAGCCCAGATACCGACGCCGACCGCGAGATCCACGCATGCATTGTAGCGACGCCT
CCGCAGCCCTTCGTGGTTCGTGCTGGCGCAGGTTCCGGCAAGACCACCTCCCTCATCAAGGCGCTGGACTGG
GTGATCTCGGAGCACGGCGCCAGCATGCGGGCGAGGAAGCAGAAGGTCGCGTGCATCACGTATACCGACCTT
GCCACCAATGAAATCCTGGCGGACGTCAACGATGACCCGCTGGTTCATGTCTCGACCATCCACAGCTTTTAC
TGGTCTATTGCAAAGACGTTCCAGGCCGACATCAAGGTTTGGCTGCAGAACGACATCCGCAGGCGGATCTCC
GAACTTGAAGAAGAGTTCGAGAATTACAGCTCGCGTGTCCGGCAGACCACGCGCGACAGGAACAAGGCCGAC
CAAGAGCGATATGTCCGAAGCCTGGAGGCTGTGGCCGGCGTCAGGACGTTCAACTACGGCGTGGGCAGTGAC
TACGCCAAGGGCATACTTGGCCACGAGGACATCCTTCAGCTCGCCGACTTCCTGCTACAAAACCGCCCGCTG
TTCCGACGGGTCGTGGCGCTGAGCTACCCGTTCGTGTTTATCGATGAGAGTCAGGACACGTTCCCGGGTGTA
GTGAAGTCTTTCAAGGAAGTGGAAGCCCAGATGCAGGGCAAGTTCTGCCTTGGTTTTTTCGGCGACCCGATG
CAGTCGATCTTCATGAGAGGCGCAGGGGACATCCAGCTTGAGGATCATTGGCGGGCCATCACGAAGCCGGAG
AACTTTCGCTGCGCCAAGCAGATCCTTGACGTCGCCAATGCCGTGCGCGCGCAGGGCGATGGCATGGAGCAA
GTCCGCGGGCTGCACGAGAGGGTCGATGGGAACCTCAAGCTGGTGGAGGGGTCGGCCCGGATGTTCGTCTTG
CCGAACACGCTGAACCGAACCGAGGCTTTGGCAAGAGTCCGAGCGTGGAGCTCGGCGACGAACAACGACGAG
GGTTGGACAACCCCAGACATCGCAGTCAAGATTCTTGTCATCGTGCACCGCATGGCCGCAAACCGGCTTGGC
TTCGGCGGCATCTACTCGGCGCTGAACGACAAGACGTCGGATGCCATGAAGCAAGGGATGCAGGACGGCACC
GGTTGGCCCGTTCGACCCTTCCTAAGTTTTGCGCTACCGATCGTTGCAGCTGTGAAGGCCGGCAATGAGTTC
GCGGCGATGAGCCTGCTCCGGGAATTCAGCCCGCGCCTGGCGCCTGCGGCTCTGACCGGCCGACGTGCCGCG
GATGTATTGCGAGAGCTGCACGCTGCTGCGTCGAGGCTTGTCGCCATGCTGGACGAGGCAGGGACCACCATT
GGTGACATAGCTCTCCATCTCTGTGACACGGGTCTTTTTGAGTTCGACGAGCGCTATGCGCGTGTTCTTGGG
TTTGTCAGGGATATTGCTGACACCGCTCAGGAGCCCGAGGCTGCTGATGCAGTTCCGGCCGAAGGATTATCC
TTGGACGCGACAATGGCCAAGTTCTTCAATTGCTCTGCGCAAGAGCTTTGGCCCTATGAACGCTATGTCTCA
GAAGGCTCCCCCTATGCCACGCAGCACGGCGTGAAGGGAGCGCAGTTCGAACGCGTCATGGTGGTGATGGAC
GAGGAAGAAAGCGACTACCGAACGTACAACTACGAGCGTGTCTTCGCGAGTGCTGAGGCCCGCGCTGCAGAT
CGTGCACGAGCACTAGACGGTGATGAAAACACTTGGAGCCGAACGCTGCGACTGCTTTACGTCTGCTGCACT
CGTGCCCAGCGGGGGCTGGTACTAGCGTTCTTTGTCGCCGACCCTGCGACCACCCTGGAAAACGTCGTGGCG
AGCGGGATCTTGCCGCGAAGCGCAGTCTTTACGCAGGAAGTGTTAGTTGGATGGCCATAG
Translation:
MSRRIDSPDTDADREIHACIVATPPQPFVVRAGAGSGKTTSLIKALDWVISEHGASMRARKQKVACITYTDL
ATNEILADVNDDPLVHVSTIHSFYWSIAKTFQADIKVWLQNDIRRRISELEEEFENYSSRVRQTTRDRNKAD
QERYVRSLEAVAGVRTFNYGVGSDYAKGILGHEDILQLADFLLQNRPLFRRVVALSYPFVFIDESQDTFPGV
VKSFKEVEAQMQGKFCLGFFGDPMQSIFMRGAGDIQLEDHWRAITKPENFRCAKQILDVANAVRAQGDGMEQ
VRGLHERVDGNLKLVEGSARMFVLPNTLNRTEALARVRAWSSATNNDEGWTTPDIAVKILVIVHRMAANRLG
FGGIYSALNDKTSDAMKQGMQDGTGWPVRPFLSFALPIVAAVKAGNEFAAMSLLREFSPRLAPAALTGRRAA
DVLRELHAAASRLVAMLDEAGTTIGDIALHLCDTGLFEFDERYARVLGFVRDIADTAQEPEAADAVPAEGLS
LDATMAKFFNCSAQELWPYERYVSEGSPYATQHGVKGAQFERVMVVMDEEESDYRTYNYERVFASAEARAAD
RARALDGDENTWSRTLRLLYVCCTRAQRGLVLAFFVADPATTLENVVASGILPRSAVFTQEVLVGWP*
AnnotationID:403GeneID:394
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 08:08:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
The ORF has been reported to be related to pathogenesis.
The aa sequence 21-610 contains uvrD domain, which is DNA/RNA helicase.



















    ReferenceID:791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17064




  
Author/Investigator(s):
        





  
Title:
        CDD-research




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-394.htm


    		




 
URL:

















    ReferenceID:17933




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:394
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
30482
                           gb|AAP84135.1|
                           (AY273869) pathogenesis-related protein [Pseudomonas aeruginosa]
                           643
                           99.84
                           99.84
                           0
                           3303.0
     

     
     
30483
                           gb|AAL12240.1|
                           (AY049069) DNA helicase [Pseudomonas aeruginosa]
                           643
                           53.03
                           53.03
                           301
                           1767.0
     

     






      

          
GC ORFID: 43396How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL008Glimmer Score: 

          
Start: 4614111Stop: 4616042

          
Length: 1932


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL008 643 Homolog: Pathogenicity-related protein / Protein fused from putative helicase (Methanosarcina acetivorans / C2A) and hypothetical protein PA1935 (P.aeruginosa / PA01) (AAM05538+AAG05323) translation of RL008Homolog Bit Score 1276.0

          
Other Homologs:  t_RL008 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGACGAATTGATAGCCCAGATACCGACGCCGACCGCGAGATCCACGCATGCATTGTAGCGACGCCT 
CCGCAGCCCTTCGTGGTTCGTGCTGGCGCAGGTTCCGGCAAGACCACCTCCCTCATCAAGGCGCTGGACTGG 
GTGATCTCGGAGCACGGCGCCAGCATGCGGGCGAGGAAGCAGAAGGTCGCGTGCATCACGTATACCGACCTT 
GCCACCAATGAAATCCTGGCGGACGTCAACGATGACCCGCTGGTTCATGTCTCGACCATCCACAGCTTTTAC 
TGGTCTATTGCAAAGACGTTCCAGGCCGACATCAAGGTTTGGCTGCAGAACGACATCCGCAGGCGGATCTCC 
GAACTTGAAGAAGAGTTCGAGAATTACAGCTCGCGTGTCCGGCAGACCACGCGCGACAGGAACAAGGCCGAC 
CAAGAGCGATATGTCCGAAGCCTGGAGGCTGTGGCCGGCGTCAGGACGTTCAACTACGGCGTGGGCAGTGAC 
TACGCCAAGGGCATACTTGGCCACGAGGACATCCTTCAGCTCGCCGACTTCCTGCTACAAAACCGCCCGCTG 
TTCCGACGGGTCGTGGCGCTGAGCTACCCGTTCGTGTTTATCGATGAGAGTCAGGACACGTTCCCGGGTGTA 
GTGAAGTCTTTCAAGGAAGTGGAAGCCCAGATGCAGGGCAAGTTCTGCCTTGGTTTTTTCGGCGACCCGATG 
CAGTCGATCTTCATGAGAGGCGCAGGGGACATCCAGCTTGAGGATCATTGGCGGGCCATCACGAAGCCGGAG 
AACTTTCGCTGCGCCAAGCAGATCCTTGACGTCGCCAATGCCGTGCGCGCGCAGGGCGATGGCATGGAGCAA 
GTCCGCGGGCTGCACGAGAGGGTCGATGGGAACCTCAAGCTGGTGGAGGGGTCGGCCCGGATGTTCGTCTTG 
CCGAACACGCTGAACCGAACCGAGGCTTTGGCAAGAGTCCGAGCGTGGAGCTCGGCGACGAACAACGACGAG 
GGTTGGACAACCCCAGACATCGCAGTCAAGATTCTTGTCATCGTGCACCGCATGGCCGCAAACCGGCTTGGC 
TTCGGCGGCATCTACTCGGCGCTGAACGACAAGACGTCGGATGCCATGAAGCAAGGGATGCAGGACGGCACC 
GGTTGGCCCGTTCGACCCTTCCTAAGTTTTGCGCTACCGATCGTTGCAGCTGTGAAGGCCGGCAATGAGTTC 
GCGGCGATGAGCCTGCTCCGGGAATTCAGCCCGCGCCTGGCGCCTGCGGCTCTGACCGGCCGACGTGCCGCG 
GATGTATTGCGAGAGCTGCACGCTGCTGCGTCGAGGCTTGTCGCCATGCTGGACGAGGCAGGGACCACCATT 
GGTGACATAGCTCTCCATCTCTGTGACACGGGTCTTTTTGAGTTCGACGAGCGCTATGCGCGTGTTCTTGGG 
TTTGTCAGGGATATTGCTGACACCGCTCAGGAGCCCGAGGCTGCTGATGCAGTTCCGGCCGAAGGATTATCC 
TTGGACGCGACAATGGCCAAGTTCTTCAATTGCTCTGCGCAAGAGCTTTGGCCCTATGAACGCTATGTCTCA 
GAAGGCTCCCCCTATGCCACGCAGCACGGCGTGAAGGGAGCGCAGTTCGAACGCGTCATGGTGGTGATGGAC 
GAGGAAGAAAGCGACTACCGAACGTACAACTACGAGCGTGTCTTCGCGAGTGCTGAGGCCCGCGCTGCAGAT 
CGTGCACGAGCACTAGACGGTGATGAAAACACTTGGAGCCGAACGCTGCGACTGCTTTACGTCTGCTGCACT 
CGTGCCCAGCGGGGGCTGGTACTAGCGTTCTTTGTCGCCGACCCTGCGACCACCCTGGAAAACGTCGTGGCG 
AGCGGGATCTTGCCGCGAAGCGCAGTCTTTACGCAGGAAGTGTTAGTTGGATGGCCATAG