ViewGene
Locus Name:
GeneID:
Location:

GeneID:3939
TrivialName: PA14_27160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27160
PAO1 Ortholog Locus:PA2856
Sequence Length:606
Protein Length:201
Start: 2360105
Stop: 2360710
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06244.1|AE004712_4 (AE004712) acyl-CoA thioesterase I precursor [Pseudomonas aeruginosa PAO1]
Identities = 200/201 (99%), Positives = 201/201 (100%)
Sequence:
ATGCGTGCATTGCTGTTGAGCGGCTGCCTGGCCCTGGTCCTGCTGACCCAGCAGGCCGCGGCGCAGACGCTG
TTGGTCGTGGGCGATAGTATCAGCGCCGCTTTGGGACTGGATACCAGCCAGGGCTGGGTCGCCCTGTTGCAG
AAGCGCCTCGCCGACGAAGGTTACGACTACCGGGTGGTGAACGCCTCGATCAGCGGCGACACCTCCGCGGGC
GGCCTGGCGCGCCTGCCGGCGCTGCTTGCCGAGGAGAAGCCGGCGCTGGTGGTGATCGAGCTGGGAGGCAAC
GACGGGCTGCGCGGAATGGCGCCGGCGCAATTGCAACAGAATCTTGCCAGCATGGCGCAAAAGGCCCGGGCG
GAAGGGGCGAAGGTGCTGCTGCTGGGTATCCAGTTGCCGCCGAACTACGGCCCGCGCTACATCGAGGCCTTT
TCCAAGGTCTACGGCGCGGTCGCGGCGCAGGAAAAGACCGCCCTGGTGCCGTTTTTCCTCGAAGGGGTCGGC
GGGGTCCAGGGGATGATGCAGGCGGATGGCATCCATCCGGCGCTCGCCGCCCAGCCGAGGCTCCTGGAAAAT
GTCTGGCCGACGCTGAAACCGCTGCTTTGA
Translation:
MRALLLSGCLALVLLTQQAAAQTLLVVGDSISAALGLDTSQGWVALLQKRLADEGYDYRVVNASISGDTSAG
GLARLPALLAEEKPALVVIELGGNDGLRGMAPAQLQQNLASMAQKARAEGAKVLLLGIQLPPNYGPRYIEAF
SKVYGAVAAQEKTALVPFFLEGVGGVQGMMQADGIHPALAAQPRLLENVWPTLKPLL*
AnnotationID:3946GeneID:3939
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 05:05:34
Gene Name:tesA
Confidence Code:2
GeneProduct:acyl-CoA thioesterase I precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2755
Secondary Functional Category(ies):
EC Number:3.1.2.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55782.1| (AE016863) acyl-CoA thioesterase I [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 201

 Score =  283 bits (724), Expect = 4e-76
 Identities = 143/201 (71%), Positives = 166/201 (82%)

>gb|AAN67931.1|AE016425_8 (AE016782) lipase, GDSL family [Pseudomonas putida KT2440]
          Length = 201

 Score =  281 bits (718), Expect = 2e-75
 Identities = 145/201 (72%), Positives = 163/201 (81%)

>emb|CAE42020.1| (BX640416) acyl-CoA thioesterase I precursor [Bordetella pertussis]
          Length = 202

 Score =  209 bits (533), Expect = 6e-54
 Identities = 103/183 (56%), Positives = 136/183 (74%)






 
Structural Features:
COG2755, TesA, Lysophospholipase L1 and related esterases 
[Amino acid transport and metabolism]
CD-Length = 216 residues,  98.1% aligned
Score = 99.4 bits (246), Expect = 3e-22
Identities = 76/212 (35%), Positives = 100/212 (47%), Gaps = 24/212 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7880




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25023




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36210




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3939_cdd.html


    		




 
URL:

















    ReferenceID:36404




  
Author/Investigator(s):
        Cho H, Cronan JE Jr.





  
Title:
        Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme.




  
PubMed:
        8098033


MedLine:
        




    
Source:
J Biol Chem. 1993 May 5;268(13):9238-45.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8098033









           
Homologs By Global Alignment 

           

       



     
Gene ID:3939
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6175
                           PA2856_tr
                           translation of PA2856
                           201
                           99.50
                           99.99
                           0
                           993.0
     

     
     
171338
                           gb|AAG06244.1|AE004712_4
                           (AE004712) acyl-CoA thioesterase I precursor [Pseudomonas aeruginosa PAO1]
                           201
                           99.50
                           99.99
                           0
                           993.0
     

     
     
171340
                           gb|AAN67931.1|AE016425_8
                           (AE016782) lipase, GDSL family [Pseudomonas putida KT2440]
                           201
                           72.13
                           81.09
                           0
                           718.0
     

     
     
171339
                           gb|AAO55782.1|
                           (AE016863) acyl-CoA thioesterase I [Pseudomonas syringae pv. tomato str. DC3000]
                           201
                           71.14
                           82.58
                           0
                           724.0
     

     
     
171344
                           gb|AAM35721.1|
                           (AE011715) acyl-CoA thioesterase I [Xanthomonas axonopodis pv. citri str. 306]
                           211
                           52.60
                           63.98
                           13
                           524.0
     

     






      

          
GC ORFID: 46941How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2856Glimmer Score: 

          
Start: 2593821Stop: 2593216

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2856 translation of PA2856Homolog Bit Score 387.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1051 (ORF: BLASTX 365.0), t_PA2856 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGCATTGCTGTTGAGCGGCTGCCTGGCCCTGGTCCTGCTGACCCAGCAGGCCGCGGCGCAGACGCTG 
TTGGTCGTGGGCGATAGTATCAGCGCCGCTTTGGGACTGGATACCAGCCAGGGCTGGGTCGCCCTGTTGCAG 
AAGCGCCTCGCCGACGAAGGTTACGACTACCGGGTGGTGAACGCCTCGATCAGCGGCGACACCTCCGCGGGC 
GGCCTGGCGCGCCTGCCGGCGCTGCTTGCCGAGGAGAAGCCGGCGCTGGTGGTGATCGAGCTGGGAGGCAAC 
GACGGGCTGCGCGGAATGGCGCCGGCGCAATTGCAACAGAATCTTGCCAGCATGGCGCAAAAGGCCCGGGCG 
GAAGGGGCGAAGGTGCTGCTGCTGGGTATCCAGTTGCCGCCGAACTACGGCCCGCGCTACATCGAGGCCTTT 
TCCAAGGTCTACGGCGCGGTCGCGGCGCAGGAAAAGACCGCCCTGGTGCCGTTTTTCCTCGAAGGGGTCGGC 
GGGGTCCAGGGGATGATGCAGGCGGATGGCATCCATCCGGCGCTCGCCGCCCAGCCGAGGCTCCTGGAAAAT 
GTCTGGCCGACGCTGAAACCGCTGCTTTGA