ViewGene
Locus Name:
GeneID:
Location:

GeneID:3938
TrivialName: PA14_29540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29540
PAO1 Ortholog Locus:PA2672
Sequence Length:591
Protein Length:196
Start: 2561398
Stop: 2561988
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06060.1|AE004695_13 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 194/196 (98%), Positives = 194/196 (98%)
Sequence:
ATGATCCGCTCGCGACGAAAACAGGATGCATTCACCCTGCTCGAGATGATCGTGGTGCTGCTGGTCGTTTCC
TTCATCGGCACGTTGCTCATGCAAGGGTTGAGCTATGCCAGCAAGGCCAACCAGTCCTTGCACCAGAACCTG
GGGCGCGGACAGGTCCGGGCGCTGACCTTCGATTGGTTCCGTGATGCGGTGGAGAACCTGGTCGCTCCCGAG
GCTGGCGAGGTCCGCTGGCGTCTGCGAGGGGACGAACTCAGTTTCGAGGCCATGTCTGCCGCGGCCCTGGAT
CGCCGTGCGGGCATCCCGACGCCCTTGGCCTTCCGGCTCGAGCGGCGGGCAGGAGAGGACAGGACCGAGTTG
ATCTATGTGCGAAGGCTGGAGGACAGTCGCTGGCCCCTCCTGCATCTGCGCGGCGAAGCTCGCTTCCGCTAT
CTGGACGGTCACGGCCAGTGGCACCGGGACTGGCCGCCGAGCGCGCAACTGGCCGATACCCTTCCCGAGGCG
ATGGCACTGACGGCTCCCGAGGAGCGCCTGTTTGTCCTTGTCGCGGTCGCGCTGCCCAGAGCGAGGCCCGCC
GAACATGATTTCTGA
Translation:
MIRSRRKQDAFTLLEMIVVLLVVSFIGTLLMQGLSYASKANQSLHQNLGRGQVRALTFDWFRDAVENLVAPE
AGEVRWRLRGDELSFEAMSAAALDRRAGIPTPLAFRLERRAGEDRTELIYVRRLEDSRWPLLHLRGEARFRY
LDGHGQWHRDWPPSAQLADTLPEAMALTAPEERLFVLVAVALPRARPAEHDF*
AnnotationID:3945GeneID:3938
AnnotatorUID: diggins
Modification Date/Time: 2004-12-10 07:07:28
Gene Name:
Confidence Code:3
GeneProduct:putative type II secretion system protein
Cell Localization:()
Synonyms:hplW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7878




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25021




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36343




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3938_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3938
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6174
                           PA2672_tr
                           translation of PA2672
                           196
                           98.97
                           98.97
                           0
                           995.0
     

     
     
171337
                           gb|AAG06060.1|AE004695_13
                           (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           196
                           98.97
                           98.97
                           0
                           995.0
     

     






      

          
GC ORFID: 46940How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2672Glimmer Score: 

          
Start: 2392528Stop: 2391938

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2672 translation of PA2672Homolog Bit Score 387.0

          
Other Homologs:  t_PA2672 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCTCGCGACGAAAACAGGATGCATTCACCCTGCTCGAGATGATCGTGGTGCTGCTGGTCGTTTCC 
TTCATCGGCACGTTGCTCATGCAAGGGTTGAGCTATGCCAGCAAGGCCAACCAGTCCTTGCACCAGAACCTG 
GGGCGCGGACAGGTCCGGGCGCTGACCTTCGATTGGTTCCGTGATGCGGTGGAGAACCTGGTCGCTCCCGAG 
GCTGGCGAGGTCCGCTGGCGTCTGCGAGGGGACGAACTCAGTTTCGAGGCCATGTCTGCCGCGGCCCTGGAT 
CGCCGTGCGGGCATCCCGACGCCCTTGGCCTTCCGGCTCGAGCGGCGGGCAGGAGAGGACAGGACCGAGTTG 
ATCTATGTGCGAAGGCTGGAGGACAGTCGCTGGCCCCTCCTGCATCTGCGCGGCGAAGCTCGCTTCCGCTAT 
CTGGACGGTCACGGCCAGTGGCACCGGGACTGGCCGCCGAGCGCGCAACTGGCCGATACCCTTCCCGAGGCG 
ATGGCACTGACGGCTCCCGAGGAGCGCCTGTTTGTCCTTGTCGCGGTCGCGCTGCCCAGAGCGAGGCCCGCC 
GAACATGATTTCTGA