ViewGene
Locus Name:
GeneID:
Location:

GeneID:3937
TrivialName: PA14_40790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40790
PAO1 Ortholog Locus:PA1836
Sequence Length:582
Protein Length:193
Start: 3640656
Stop: 3640075
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05225.1|AE004609_12 (AE004609) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 193/193 (100%), Positives = 193/193 (100%)
Sequence:
ATGGGCCGTTCTTCCCGCAAAGACGAGATTCTCCAGGCCGCCCTGGCCTGCTTCAGCGAGCATGGCGTAGAC
GCCACCACCATCGAGATGATCCGCGACCGTTCCGGAGCGAGCATCGGTAGCCTCTACCACCATTTCGGCAAC
AAGGAACGCATCCATGGCGAACTGTACCTGGCCGGGATCGGCCAGTACGCGGCGTTGCTCGAAGCCGGCTTC
GCCAGGGCGCGCAGCGCCGAGGAAACGGTCAGGTTGCTGGTCACCAGCTATATCGACTGGGTCGTGGCGAAT
CCTGACTGGGCACGCTTCATCCTGCACAGCCGCGGGCGGGTAGAGGCGGGGGAGTTGGGCGAGCGCCTGCGG
GCCGACAACCAGGCCCACTTCGCGCGGATCCATGCGGCGCTGGCGGGATATCGGGCCGAGGGCCTGTTCCGC
GAGATGCCGGACGACTGCTTTGCTTCGGTGGTGATCGGCCCGGCCCACGACCTTGCCCGCCAGTGGCTGGCC
GGGCGAACCCGGGTGGCGTTGGCCGACTGTCGCGAACTGCTGGCGCAGGTGGCCTGGGACAGCGTGCGCGCG
GCCTGA
Translation:
MGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGF
ARARSAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR
EMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVAWDSVRAA*
AnnotationID:3944GeneID:3937
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:48
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1836
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440,COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC49339.1| (AP005950) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 198

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 8/173 (4%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues,  87.2% aligned
Score = 51.5 bits (124), Expect = 6e-08
Identities = 22/41 (53%), Positives = 27/41 (65%)

COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  82.1% aligned
Score = 53.1 bits (125), Expect = 2e-08






   
Genomic Context:






   
Comment:


















    ReferenceID:7876




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25019




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37058




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3937_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3937
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6173
                           PA1836_tr
                           translation of PA1836
                           193
                           99.99
                           99.99
                           0
                           995.0
     

     
     
171336
                           gb|AAG05225.1|AE004609_12
                           (AE004609) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           193
                           99.99
                           99.99
                           0
                           995.0
     

     






      

          
GC ORFID: 46939How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1836Glimmer Score: 

          
Start: 1313254Stop: 1313835

          
Length: 582


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1836 translation of PA1836Homolog Bit Score 387.0

          
Other Homologs:  t_PA1836 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCCGTTCTTCCCGCAAAGACGAGATTCTCCAGGCCGCCCTGGCCTGCTTCAGCGAGCATGGCGTAGAC 
GCCACCACCATCGAGATGATCCGCGACCGTTCCGGAGCGAGCATCGGTAGCCTCTACCACCATTTCGGCAAC 
AAGGAACGCATCCATGGCGAACTGTACCTGGCCGGGATCGGCCAGTACGCGGCGTTGCTCGAAGCCGGCTTC 
GCCAGGGCGCGCAGCGCCGAGGAAACGGTCAGGTTGCTGGTCACCAGCTATATCGACTGGGTCGTGGCGAAT 
CCTGACTGGGCACGCTTCATCCTGCACAGCCGCGGGCGGGTAGAGGCGGGGGAGTTGGGCGAGCGCCTGCGG 
GCCGACAACCAGGCCCACTTCGCGCGGATCCATGCGGCGCTGGCGGGATATCGGGCCGAGGGCCTGTTCCGC 
GAGATGCCGGACGACTGCTTTGCTTCGGTGGTGATCGGCCCGGCCCACGACCTTGCCCGCCAGTGGCTGGCC 
GGGCGAACCCGGGTGGCGTTGGCCGACTGTCGCGAACTGCTGGCGCAGGTGGCCTGGGACAGCGTGCGCGCG 
GCCTGA