ViewGene

Locus Name:
GeneID:
Location:

GeneID:3936
TrivialName: PA14_59660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59660
PAO1 Ortholog Locus:
Sequence Length:582
Protein Length:193
Start: 5308761
Stop: 5309342
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84175.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 193/193 (100%), Positives = 193/193 (100%)
Sequence:
ATGGCAACGTCTGTAGTTCGAGCCCTCCAGTTGGCCACCCTGCTGGTCCTGGTCAACATCGCTCAGGCCGCC
GTGGATCCACCGCCGGCGTACAAGCAAATCGCCCTGCCCAAAGGGGTTCCGGCCGAGGTGCTCTACTCGGTC
GCGCTGACCGAGAGCAAGGTCCTGCTGCGCGGCGAATACGTTCCCTGGCCCTGGACATTGAACGTCGCCGGG
AAATCTTACTACTACGCGACCCGCACCGCCGCCTGCACAGCGCTACTCGCGGCGATCAACCTCTACGGGGCC
AAGAGCGTCGATTCCGGCCTCGGCCAGGTCAACATCGGCTGGAACGGACATCGTTTCTCCAGCCCCTGCGAG
TCCCTGGATCCGTACAAGAACCTGGACGCCACCTCCGACATCCTGATCGAGCAGCGGGACGCCCTGTATGCA
TCCGCCCCGGGAAGACCGGTGGACTGGATCCAAGTTGCCGGCCGCTACCACCGCCCCGCCGGCGGCGCGCCT
GCCGCCAAATACCGTAGGACGGTTTCCCGCCACCTTAGCCAAGTTCTCGGCGTCAACCTACTGGTGACCAAT
CCATGA
Translation:
MATSVVRALQLATLLVLVNIAQAAVDPPPAYKQIALPKGVPAEVLYSVALTESKVLLRGEYVPWPWTLNVAG
KSYYYATRTAACTALLAAINLYGAKSVDSGLGQVNIGWNGHRFSSPCESLDPYKNLDATSDILIEQRDALYA
SAPGRPVDWIQVAGRYHRPAGGAPAAKYRRTVSRHLSQVLGVNLLVTNP*
AnnotationID:3943GeneID:3936
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 20:08:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7874
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25017
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3936

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
171327 gb|AAP84175.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 193 99.99 99.99 0 996.0
171328 gb|AAN62292.1|AF440524_79 (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa] 198 48.48 62.62 16 455.0
171329 gb|AAN62161.1|AF440523_68 (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa] 211 45.02 57.81 33 441.0
171330 emb|CAE92924.1| (AJ617740) hypothetical protein [Pseudomonas putida] 210 44.76 57.61 31 434.0
171331 gb|AAM37109.1| (AE011862) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 217 42.85 53.45 38 424.0
GC ORFID: 46938How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL050Glimmer Score:
Start: 4572440Stop: 4573021
Length: 582
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL050 193 Homolog: XAC2256 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37109) translation of RL050Homolog Bit Score 388.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1630 (ORF: BLASTX 207.0), t_RL050 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAACGTCTGTAGTTCGAGCCCTCCAGTTGGCCACCCTGCTGGTCCTGGTCAACATCGCTCAGGCCGCC
GTGGATCCACCGCCGGCGTACAAGCAAATCGCCCTGCCCAAAGGGGTTCCGGCCGAGGTGCTCTACTCGGTC
GCGCTGACCGAGAGCAAGGTCCTGCTGCGCGGCGAATACGTTCCCTGGCCCTGGACATTGAACGTCGCCGGG
AAATCTTACTACTACGCGACCCGCACCGCCGCCTGCACAGCGCTACTCGCGGCGATCAACCTCTACGGGGCC
AAGAGCGTCGATTCCGGCCTCGGCCAGGTCAACATCGGCTGGAACGGACATCGTTTCTCCAGCCCCTGCGAG
TCCCTGGATCCGTACAAGAACCTGGACGCCACCTCCGACATCCTGATCGAGCAGCGGGACGCCCTGTATGCA
TCCGCCCCGGGAAGACCGGTGGACTGGATCCAAGTTGCCGGCCGCTACCACCGCCCCGCCGGCGGCGCGCCT
GCCGCCAAATACCGTAGGACGGTTTCCCGCCACCTTAGCCAAGTTCTCGGCGTCAACCTACTGGTGACCAAT
CCATGA