ViewGene
Locus Name:
GeneID:
Location:

GeneID:3934
TrivialName: PA14_05050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05050
PAO1 Ortholog Locus:PA0387
Sequence Length:594
Protein Length:197
Start: 444190
Stop: 443597
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03776.1|AE004476_6 (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGATCAAGCTCGAACAGCTGGTGCTGGCCAGCCACAATGCCGGCAAACTCAAGGAACTCCAGGCCATGCTC
GGCGCCAGCGTGAAGGTGCGCTCGATCGGCGAGTTCAGCCAGGTGGAACCGGAGGAAACCGGTCTTTCCTTC
GTCGAGAACGCCATCCTCAAGGCACGCAACGCCGCACGCCTCTCCGGCCTGCCGGCGCTGGCCGACGACTCC
GGGCTGGCGGTGGACTTCCTCGGCGGCGCGCCGGGCATCTACTCGGCGCGCTATGCCGACGGCCGGGGCGAC
GCGGCGAACAACGCCAAGCTGCTGGAGGCCATGAAGGATGTCCCGGACGCCGAGCGCGGCGCACAGTTCGTC
AGCGTGCTGGCGCTGGTGCGCCACGCCGACGACCCGCTGCCGATCCTCTGCGAGGGCATCTGGGAAGGCCGC
ATCCTTCGCGAAGCCCGCGGCGCCCACGGCTTCGGCTACGACCCGCTGTTCTGGGTGCCGGAACGCGACTGC
TCCAGCGCCGAGCTGGCGCCCGAGGAGAAGAACCGCCTCAGCCACCGGGCCCGCGCCATGGCCCTGCTCAAG
CAGCGCCTGGGCCTCTGA
Translation:
MIKLEQLVLASHNAGKLKELQAMLGASVKVRSIGEFSQVEPEETGLSFVENAILKARNAARLSGLPALADDS
GLAVDFLGGAPGIYSARYADGRGDAANNAKLLEAMKDVPDAERGAQFVSVLALVRHADDPLPILCEGIWEGR
ILREARGAHGFGYDPLFWVPERDCSSAELAPEEKNRLSHRARAMALLKQRLGL*
AnnotationID:3941GeneID:3934
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative Ham1 protein
Cell Localization:()
Synonyms:PA0387
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:putative xanthosine triphosphate pyrophosphatase
Functional Category Confidence Code:5
COGs:cd00515,COG0127,pfam01725
Secondary Functional Category(ies):DNA replication, recombination, modification and repair
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70665.1|AE016710_10 (AE016793) Ham1 protein [Pseudomonas putida KT2440]
          Length = 198

 Score =  342 bits (877), Expect = 8e-94
 Identities = 170/197 (86%), Positives = 185/197 (93%)

>gb|AAO58479.1| (AE016874) Ham1 protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 197

 Score =  337 bits (863), Expect = 3e-92
 Identities = 167/196 (85%), Positives = 179/196 (91%)

>gb|AAF93629.1| (AE004132) HAM1 protein [Vibrio cholerae]
          Length = 200

 Score =  210 bits (535), Expect = 3e-54
 Identities = 107/192 (55%), Positives = 142/192 (73%), Gaps = 6/192 (3%)






 
Structural Features:
cd00515, HAM1, NTPase/HAM1.
CD-Length = 183 residues,  99.5% aligned
Score =  228 bits (584), Expect = 2e-61
Identities = 93/188 (49%), Positives = 122/188 (64%), Gaps = 7/188 (3%)

COG0127, Xanthosine triphosphate pyrophosphatase 
[Nucleotide transport and metabolism]
CD-Length = 194 residues,  97.9% aligned
Score =  229 bits (585), Expect = 2e-61
Identities = 98/194 (50%), Positives = 130/194 (67%), Gaps = 6/194 (3%)

pfam01725, Ham1p_like, Ham1 family. 
CD-Length = 182 residues, 100.0% aligned
Score =  187 bits (475), Expect = 9e-49
Identities = 83/189 (43%), Positives = 114/189 (60%), Gaps = 7/189 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7871




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33716




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3934_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3934
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6172
                           PA0387_tr
                           translation of PA0387
                           197
                           99.99
                           99.99
                           0
                           996.0
     

     
     
171230
                           gb|AAG03776.1|AE004476_6
                           (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           996.0
     

     
     
171231
                           gb|AAN70665.1|AE016710_10
                           (AE016793) Ham1 protein [Pseudomonas putida KT2440]
                           198
                           85.85
                           93.43
                           1
                           877.0
     

     
     
171232
                           gb|AAO58479.1|
                           (AE016874) Ham1 protein [Pseudomonas syringae pv. tomato str. DC3000]
                           198
                           84.34
                           90.40
                           2
                           863.0
     

     
     
171234
                           dbj|BAC60884.1|
                           (AP005082) Ham1 protein [Vibrio parahaemolyticus]
                           205
                           53.65
                           70.24
                           13
                           530.0
     

     






      

          
GC ORFID: 46936How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0387Glimmer Score: 

          
Start: 6245532Stop: 6244939

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0387 translation of PA0387Homolog Bit Score 388.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3723 (ORF: BLASTX 339.0), t_PA0387 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAAGCTCGAACAGCTGGTGCTGGCCAGCCACAATGCCGGCAAACTCAAGGAACTCCAGGCCATGCTC 
GGCGCCAGCGTGAAGGTGCGCTCGATCGGCGAGTTCAGCCAGGTGGAACCGGAGGAAACCGGTCTTTCCTTC 
GTCGAGAACGCCATCCTCAAGGCACGCAACGCCGCACGCCTCTCCGGCCTGCCGGCGCTGGCCGACGACTCC 
GGGCTGGCGGTGGACTTCCTCGGCGGCGCGCCGGGCATCTACTCGGCGCGCTATGCCGACGGCCGGGGCGAC 
GCGGCGAACAACGCCAAGCTGCTGGAGGCCATGAAGGATGTCCCGGACGCCGAGCGCGGCGCACAGTTCGTC 
AGCGTGCTGGCGCTGGTGCGCCACGCCGACGACCCGCTGCCGATCCTCTGCGAGGGCATCTGGGAAGGCCGC 
ATCCTTCGCGAAGCCCGCGGCGCCCACGGCTTCGGCTACGACCCGCTGTTCTGGGTGCCGGAACGCGACTGC 
TCCAGCGCCGAGCTGGCGCCCGAGGAGAAGAACCGCCTCAGCCACCGGGCCCGCGCCATGGCCCTGCTCAAG 
CAGCGCCTGGGCCTCTGA