ViewGene
Locus Name:
GeneID:
Location:

GeneID:3933
TrivialName: PA14_12540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12540
PAO1 Ortholog Locus:PA3968
Sequence Length:570
Protein Length:189
Start: 1078011
Stop: 1078580
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07355.1|AE004814_10 (AE004814) probable pseudouridine synthase [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
GTGGCCAAGGCGCCGCCGAGCGAGCCGAAGCTGCTGCTGTTCAACAAGCCGTTCGACGTACTGACCCAGTTC
AACGACGAGCAAGGGCGCTCGACCCTCAAGGACTTCATCCCGGTGCCGGGCGTGTATCCGGCCGGGCGCCTG
GACCGCGACAGCGAGGGCCTGTTGCTGCTGACCAACGACGGTCGCCTGCAGGCGCGCATCGCCGACCCCCGG
CACAAGCTGCCGAAGACCTACTGGGTGCAGGTCGAAGGCACGCCGGACGAGGAGCAATTGCGGCGCCTGCGC
GAGGGCGTGACGCTCAACGACGGCCCGACGCTGCCCGCCGAGGCGCGTCTGCTGGATGAGCCGACGTTGTGG
GAGCGGGTGCCGCCGGTGCGTTTTCGCAAGTCGGTGCCGACCCACTGGCTGGAACTGGTGATTCGCGAGGGG
CGCAATCGCCAGGTACGGCGGATGACGGCGGCGGTGGGCTTGCCGACGCTGCGGCTGGTGCGGGTGCGGATC
GGCCCCTGGAGCCTGGACGGCCTGGGCCTCGGGGAATGGCGGGAAGTGCCGGCGCGGCTGGACTGA
Translation:
MAKAPPSEPKLLLFNKPFDVLTQFNDEQGRSTLKDFIPVPGVYPAGRLDRDSEGLLLLTNDGRLQARIADPR
HKLPKTYWVQVEGTPDEEQLRRLREGVTLNDGPTLPAEARLLDEPTLWERVPPVRFRKSVPTHWLELVIREG
RNRQVRRMTAAVGLPTLRLVRVRIGPWSLDGLGLGEWREVPARLD*
AnnotationID:3940GeneID:3933
AnnotatorUID: urbach
Modification Date/Time: 2004-05-24 12:12:44
Gene Name:
Confidence Code:3
GeneProduct:possible pseudouridylate synthase
Cell Localization:()
Synonyms:PA3968
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1187, pfam00849
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14967




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25011




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3933
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6171
                           PA3968_tr
                           translation of PA3968
                           189
                           99.99
                           99.99
                           0
                           996.0
     

     
     
171180
                           gb|AAG07355.1|AE004814_10
                           (AE004814) probable pseudouridine synthase [Pseudomonas aeruginosa PAO1]
                           189
                           99.47
                           99.99
                           0
                           993.0
     

     
     
171203
                           gb|AAM39592.1|
                           (AE012123) pseudouridylate synthase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           196
                           59.69
                           67.34
                           16
                           563.0
     

     
     
171201
                           gb|AAM35182.1|
                           (AE011654) pseudouridylate synthase [Xanthomonas axonopodis pv. citri str. 306]
                           199
                           59.29
                           67.83
                           17
                           574.0
     

     
     
171184
                           gb|AAC74219.1|
                           (AE000213) orf, hypothetical protein [Escherichia coli K12]
                           210
                           56.66
                           68.09
                           24
                           615.0
     

     






      

          
GC ORFID: 46935How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3968Glimmer Score: 

          
Start: 3875927Stop: 3875358

          
Length: 570


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3968 translation of PA3968Homolog Bit Score 388.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5347 (ORF: BLASTX 334.0), t_PA3968 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCCAAGGCGCCGCCGAGCGAGCCGAAGCTGCTGCTGTTCAACAAGCCGTTCGACGTACTGACCCAGTTC 
AACGACGAGCAAGGGCGCTCGACCCTCAAGGACTTCATCCCGGTGCCGGGCGTGTATCCGGCCGGGCGCCTG 
GACCGCGACAGCGAGGGCCTGTTGCTGCTGACCAACGACGGTCGCCTGCAGGCGCGCATCGCCGACCCCCGG 
CACAAGCTGCCGAAGACCTACTGGGTGCAGGTCGAAGGCACGCCGGACGAGGAGCAATTGCGGCGCCTGCGC 
GAGGGCGTGACGCTCAACGACGGCCCGACGCTGCCCGCCGAGGCGCGTCTGCTGGATGAGCCGACGTTGTGG 
GAGCGGGTGCCGCCGGTGCGTTTTCGCAAGTCGGTGCCGACCCACTGGCTGGAACTGGTGATTCGCGAGGGG 
CGCAATCGCCAGGTACGGCGGATGACGGCGGCGGTGGGCTTGCCGACGCTGCGGCTGGTGCGGGTGCGGATC 
GGCCCCTGGAGCCTGGACGGCCTGGGCCTCGGGGAATGGCGGGAAGTGCCGGCGCGGCTGGACTGA