ViewGene
Locus Name:
GeneID:
Location:

GeneID:3932
TrivialName: PA14_27880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27880
PAO1 Ortholog Locus:PA2804
Sequence Length:582
Protein Length:193
Start: 2414592
Stop: 2414011
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06192.1|AE004707_11 (AE004707) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 192/193 (99%), Positives = 192/193 (99%)
Sequence:
ATGAGCCGCGCCCGTCACCGCTTTCTCGACGAACTGGCCGAACGCTTCGCCAGCCATGGCGCCGAGCCCTAT
GGCGAGGCAGTCAGCCAGGCCGAGCACGCGCTGCAGTGTGCGACCCTGGCCGAGCGCGCCGGCTGCTCGGAC
AGCCTTGTAGTCGCCGCCCTGCTGCACGATATCGGCCACCTCTACGAAGACCCGGCGCAGATCGACGAGGAG
GACCTGCGCCACGAGGAATTCGGCGCACGCCTGCTGCGCGAGCTGTTCCCAGAGTCGGTCTGGCAGCCGGTG
CGCCTGCACGTATCGGCCAAGCGCTTCCTCTGCGCGGTGGACCCGAGCTACCACGCCAGCCTGTCGCCGGCC
TCCCGGCACAGCCTGGTGCTGCAAGGCGGGCCGTTCGACGAGCGTGCCGCCGCGGCCTATATCAAGGCGCCC
TATGCCCAGGACGGCCTGACCCTGCGCCGCCTCGACGACCTGGCCAAGGACCCGGCCATGCGCACCCCCGAA
CTGACGCACTTCTTCCCGCTGCTGGAACGCCTGCTGCGGATTGTTCCGGATCGCGCACATCTGCGCCCGACA
GGTTAA
Translation:
MSRARHRFLDELAERFASHGAEPYGEAVSQAEHALQCATLAERAGCSDSLVVAALLHDIGHLYEDPAQIDEE
DLRHEEFGARLLRELFPESVWQPVRLHVSAKRFLCAVDPSYHASLSPASRHSLVLQGGPFDERAAAAYIKAP
YAQDGLTLRRLDDLAKDPAMRTPELTHFFPLLERLLRIVPDRAHLRPTG*
AnnotationID:3939GeneID:3932
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 09:09:13
Gene Name:
Confidence Code:3
GeneProduct:putative phosphohydrolase
Cell Localization:()
Synonyms:PA2804
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4341
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4341, Predicted HD phosphohydrolase
CD-Length = 186 residues, 100.0% aligned
Score =  232 bits (592), Expect = 2e-62
Identities = 104/186 (55%), Positives = 121/186 (65%), Gaps = 5/186 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25009




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36228




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3932_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3932
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6170
                           PA2804_tr
                           translation of PA2804
                           193
                           99.48
                           99.48
                           0
                           996.0
     

     
     
171173
                           gb|AAG06192.1|AE004707_11
                           (AE004707) hypothetical protein PA2804 [Pseudomonas aeruginosa PAO1]
                           193
                           99.48
                           99.48
                           0
                           996.0
     

     
     
171177
                           emb|CAE42553.1|
                           (BX640417) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           197
                           42.13
                           52.79
                           12
                           349.0
     

     
     
171175
                           emb|CAE32394.1|
                           (BX640442) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           197
                           41.62
                           52.79
                           12
                           346.0
     

     
     
171176
                           emb|CAE37744.1|
                           (BX640430) conserved hypothetical protein [Bordetella parapertussis]
                           197
                           41.62
                           52.79
                           12
                           346.0
     

     






      

          
GC ORFID: 46934How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2804Glimmer Score: 

          
Start: 2539334Stop: 2539915

          
Length: 582


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2804 translation of PA2804Homolog Bit Score 388.0

          
Other Homologs:  t_PA2804 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCGCCCGTCACCGCTTTCTCGACGAACTGGCCGAACGCTTCGCCAGCCATGGCGCCGAGCCCTAT 
GGCGAGGCAGTCAGCCAGGCCGAGCACGCGCTGCAGTGTGCGACCCTGGCCGAGCGCGCCGGCTGCTCGGAC 
AGCCTTGTAGTCGCCGCCCTGCTGCACGATATCGGCCACCTCTACGAAGACCCGGCGCAGATCGACGAGGAG 
GACCTGCGCCACGAGGAATTCGGCGCACGCCTGCTGCGCGAGCTGTTCCCAGAGTCGGTCTGGCAGCCGGTG 
CGCCTGCACGTATCGGCCAAGCGCTTCCTCTGCGCGGTGGACCCGAGCTACCACGCCAGCCTGTCGCCGGCC 
TCCCGGCACAGCCTGGTGCTGCAAGGCGGGCCGTTCGACGAGCGTGCCGCCGCGGCCTATATCAAGGCGCCC 
TATGCCCAGGACGGCCTGACCCTGCGCCGCCTCGACGACCTGGCCAAGGACCCGGCCATGCGCACCCCCGAA 
CTGACGCACTTCTTCCCGCTGCTGGAACGCCTGCTGCGGATTGTTCCGGATCGCGCACATCTGCGCCCGACA 
GGTTAA