ViewGene
Locus Name:
GeneID:
Location:

GeneID:3931
TrivialName: PA14_55460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55460
PAO1 Ortholog Locus:PA0684
Sequence Length:594
Protein Length:197
Start: 4937945
Stop: 4937352
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04073.1|AE004503_11 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 196/197 (99%), Positives = 197/197 (100%)
Sequence:
ATGAAGATGAATAAGCGCCTGGCGGGCCTACTGAATACCCCGGCGCAGCGCTGGAGTCCCCTGCTGCTGCGG
CTGCAGGCCTACTGGCGGCAACTGGCGCCGCGCGAGCGCAAGATTCTCGCCGGCGGTGGCCTGGCGCTATGC
CTGGCGCTGACCTGGCAAGTGTTCATCGATCCGCCGCTGGCGCGGATCGAGCATTGGCAAGCCGAGCTGCCG
CGCCTGCGTGCGCAGGCCGCGGCGGTGGACGGCGTGTTGCGCGAGGTCGAGGCGTTGCGCGGTCCGACCCTG
AGCGGTACGGCGGACGCCGAGGCGATCCGTCGCAGCCTGCGCGATCAGGGACTCGACGGTTTCCAACTGGAC
GCCCCGCAACCGGGCCAATGGCAACTGGACTTCGCCAGCGTGTCCGGCGAGGCCTTGCTGCGCTGGCTGGCG
CGCAGCCCGGCGGCGTTGCGCCTGAGCGTCAGCGAggCGCAGGTGACGCGTCTCGACGCTCCTTCCGAGGAG
CGCTCCGGCTCTTCGAACGAGCTGTCCGGCGGGCTGGTGTCCGCCTCGATCCATTTGCAGTCGACTTCCGCT
CCCAAGGATTCCCCATGA
Translation:
MKMNKRLAGLLNTPAQRWSPLLLRLQAYWRQLAPRERKILAGGGLALCLALTWQVFIDPPLARIEHWQAELP
RLRAQAAAVDGVLREVEALRGPTLSGTADAEAIRRSLRDQGLDGFQLDAPQPGQWQLDFASVSGEALLRWLA
RSPAALRLSVSEAQVTRLDAPSEERSGSSNELSGGLVSASIHLQSTSAPKDSP*
AnnotationID:3938GeneID:3931
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 15:03:27
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:()
Synonyms:PA0684, hxcZ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3149, PulM, Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
  CD-Length = 181 residues, 100.0% aligned
  Score =  149 bits (377), Expect = 4e-37

pfam04612, GspM
  Score =  104 bits (260), Expect = 2e-23







   
Genomic Context:






   
Comment:


















    ReferenceID:7865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25007




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3931
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6169
                           PA0684_tr
                           translation of PA0684
                           197
                           99.49
                           99.99
                           0
                           997.0
     

     
     
171172
                           gb|AAG04073.1|AE004503_11
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           197
                           99.49
                           99.99
                           0
                           997.0
     

     






      

          
GC ORFID: 46933How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0684Glimmer Score: 

          
Start: 15962Stop: 16555

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0684 translation of PA0684Homolog Bit Score 388.0

          
Other Homologs:  t_PA0684 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATGAATAAGCGCCTGGCGGGCCTACTGAATACCCCGGCGCAGCGCTGGAGTCCCCTGCTGCTGCGG 
CTGCAGGCCTACTGGCGGCAACTGGCGCCGCGCGAGCGCAAGATTCTCGCCGGCGGTGGCCTGGCGCTATGC 
CTGGCGCTGACCTGGCAAGTGTTCATCGATCCGCCGCTGGCGCGGATCGAGCATTGGCAAGCCGAGCTGCCG 
CGCCTGCGTGCGCAGGCCGCGGCGGTGGACGGCGTGTTGCGCGAGGTCGAGGCGTTGCGCGGTCCGACCCTG 
AGCGGTACGGCGGACGCCGAGGCGATCCGTCGCAGCCTGCGCGATCAGGGACTCGACGGTTTCCAACTGGAC 
GCCCCGCAACCGGGCCAATGGCAACTGGACTTCGCCAGCGTGTCCGGCGAGGCCTTGCTGCGCTGGCTGGCG 
CGCAGCCCGGCGGCGTTGCGCCTGAGCGTCAGCGAggCGCAGGTGACGCGTCTCGACGCTCCTTCCGAGGAG 
CGCTCCGGCTCTTCGAACGAGCTGTCCGGCGGGCTGGTGTCCGCCTCGATCCATTTGCAGTCGACTTCCGCT 
CCCAAGGATTCCCCATGA