ViewGene
Locus Name:
GeneID:
Location:

GeneID:3929
TrivialName: PA14_01350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01350
PAO1 Ortholog Locus:PA0111
Sequence Length:579
Protein Length:192
Start: 130492
Stop: 131070
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03501.1|AE004449_10 (AE004449) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/192 (99%), Positives = 192/192 (100%)
Sequence:
ATGAGTCTCGCGATTCCGATGCCTGAACGTCCGCGCCGCGCCCGCGGCCGCCTGCAACTGCTGGCGATCATC
GGCCTGGTGGTGGGGCCGATGCTGCTCGCCAGCGCCATGTACAAATGGAATTTCTGGGTGCCACAGGGGCGC
AGCTACAGCGGCGCGCTGATCGGCAACGGCCAGACCCCCGCCGACCTCGGCGTGCAGGGACGCAGCCAGGGC
GAGCAGTGGCAACTGCTGGTGACCGCGCCGGGCACTTGCGGCGAGGACTGCCAGCAACTGGTCTACCTGGCC
CGCCAGGTCAACATCGCCCTCGGCCGCGAAGCCTCGCGCGCCGGCCACGCCCTGGCCGCCAGCGGCGAGCTG
CCGGCGGACTTCGCCAACCTGGTGAGGCAGGACTACCCGCGCCTGCAGCGCTACGGCCTGGACCCGGCCCTG
TACGACAAGGCCGGCGGCGGCGAGCGGCCGCTGCTGTGGGTGGTCGACCCGCACGGCAACCTGGTGCTGCGC
TACGACGCCAAGGCCAACGGCAAGAAGCTGCTGAAGGACGTGCAACTGCTGCTCAAGCTCTCGCATATCGGT
TGA
Translation:
MSLAIPMPERPRRARGRLQLLAIIGLVVGPMLLASAMYKWNFWVPQGRSYSGALIGNGQTPADLGVQGRSQG
EQWQLLVTAPGTCGEDCQQLVYLARQVNIALGREASRAGHALAASGELPADFANLVRQDYPRLQRYGLDPAL
YDKAGGGERPLLWVVDPHGNLVLRYDAKANGKKLLKDVQLLLKLSHIG*
AnnotationID:3936GeneID:3929
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0111
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7861




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25003




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3929
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6168
                           PA0111_tr
                           translation of PA0111
                           192
                           99.47
                           99.99
                           0
                           1000.0
     

     
     
171170
                           gb|AAG03501.1|AE004449_10
                           (AE004449) hypothetical protein PA0111 [Pseudomonas aeruginosa PAO1]
                           192
                           99.47
                           99.99
                           0
                           1000.0
     

     
     
171171
                           gb|AAN65742.1|AE016200_6
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           195
                           60.00
                           76.41
                           5
                           589.0
     

     






      

          
GC ORFID: 46931How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0111Glimmer Score: 

          
Start: 5931831Stop: 5932409

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0111 translation of PA0111Homolog Bit Score 389.0

          
Other Homologs:  t_PA0111 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTCGCGATTCCGATGCCTGAACGTCCGCGCCGCGCCCGCGGCCGCCTGCAACTGCTGGCGATCATC 
GGCCTGGTGGTGGGGCCGATGCTGCTCGCCAGCGCCATGTACAAATGGAATTTCTGGGTGCCACAGGGGCGC 
AGCTACAGCGGCGCGCTGATCGGCAACGGCCAGACCCCCGCCGACCTCGGCGTGCAGGGACGCAGCCAGGGC 
GAGCAGTGGCAACTGCTGGTGACCGCGCCGGGCACTTGCGGCGAGGACTGCCAGCAACTGGTCTACCTGGCC 
CGCCAGGTCAACATCGCCCTCGGCCGCGAAGCCTCGCGCGCCGGCCACGCCCTGGCCGCCAGCGGCGAGCTG 
CCGGCGGACTTCGCCAACCTGGTGAGGCAGGACTACCCGCGCCTGCAGCGCTACGGCCTGGACCCGGCCCTG 
TACGACAAGGCCGGCGGCGGCGAGCGGCCGCTGCTGTGGGTGGTCGACCCGCACGGCAACCTGGTGCTGCGC 
TACGACGCCAAGGCCAACGGCAAGAAGCTGCTGAAGGACGTGCAACTGCTGCTCAAGCTCTCGCATATCGGT 
TGA