ViewGene

Locus Name:
GeneID:
Location:

GeneID:3926
TrivialName: PA14_38720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38720
PAO1 Ortholog Locus:PA1994
Sequence Length:564
Protein Length:187
Start: 3452444
Stop: 3453007
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05382.1|AE004626_1 (AE004626) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 186/187 (99%), Positives = 187/187 (100%)
Sequence:
ATGAGTCGCGACCGTCTGTACACCTGGGCCGGCCTGTGGCGCTCGCCGTCGTCCAGCTGGGAGGCCCTGCGC
CTGGAGGACGACCAGGCGGAAAGCCAGTTGCGCGCGCCGGACGAACGCAGCGGCCTGCCCTACCAATTGGAC
TACCGGCTGCGCTGGGACGCCGACTGGCATCTGCGTGAGGCGGTGTTCCACGTCGAAAGCGAAACCGGGGTG
CGCAAGCTGCACCTGCTCGCCGATGGCCGCGGCCACTGGCAGGACGGCGACGGCGAAGCGCTACCGGCGTTC
GACGGTTGCCTGGACATCGATCTCTGGCCAAGCCCCTTCACCAACACCTTCCCGATCCGCCGCCTGGGCCTG
GCCGATGGCCAGCGCGCGGAAATCCGCGCGCTCTACATCGAGGCCCCGGCCCTGGAGCCGCGTAGCATGCGC
CAGGCCTACACCCGCCTGGACGCCAGCCACTACCTCTACGAGAACCTCGAAGGCAGCGCGTTCAAGGCGGTA
CTGCTGGTGGACGAACAGGGCCTGGTGATCGACTACCCGGGTCTCTTCCAGCGTCTCTGA
Translation:
MSRDRLYTWAGLWRSPSSSWEALRLEDDQAESQLRAPDERSGLPYQLDYRLRWDADWHLREAVFHVESETGV
RKLHLLADGRGHWQDGDGEALPAFDGCLDIDLWPSPFTNTFPIRRLGLADGQRAEIRALYIEAPALEPRSMR
QAYTRLDASHYLYENLEGSAFKAVLLVDEQGLVIDYPGLFQRL*
AnnotationID:3933GeneID:3926
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1994
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7855
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24997
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32732
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3926_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3926

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6165 PA1994_tr translation of PA1994 187 99.46 99.99 0 1000.0
171068 gb|AAG05382.1|AE004626_1 (AE004626) hypothetical protein PA1994 [Pseudomonas aeruginosa PAO1] 187 99.46 99.99 0 1000.0
171069 emb|CAC47343.1| (AL591791) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] 211 40.75 50.71 39 344.0
171070 dbj|BAB47889.1| (AP002994) hypothetical protein [Mesorhizobium loti] 190 40.52 50.00 10 265.0
GC ORFID: 46928How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1994Glimmer Score:
Start: 1501467Stop: 1500904
Length: 564
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1994 translation of PA1994Homolog Bit Score 389.0
Other Homologs: t_PA1994 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCGCGACCGTCTGTACACCTGGGCCGGCCTGTGGCGCTCGCCGTCGTCCAGCTGGGAGGCCCTGCGC
CTGGAGGACGACCAGGCGGAAAGCCAGTTGCGCGCGCCGGACGAACGCAGCGGCCTGCCCTACCAATTGGAC
TACCGGCTGCGCTGGGACGCCGACTGGCATCTGCGTGAGGCGGTGTTCCACGTCGAAAGCGAAACCGGGGTG
CGCAAGCTGCACCTGCTCGCCGATGGCCGCGGCCACTGGCAGGACGGCGACGGCGAAGCGCTACCGGCGTTC
GACGGTTGCCTGGACATCGATCTCTGGCCAAGCCCCTTCACCAACACCTTCCCGATCCGCCGCCTGGGCCTG
GCCGATGGCCAGCGCGCGGAAATCCGCGCGCTCTACATCGAGGCCCCGGCCCTGGAGCCGCGTAGCATGCGC
CAGGCCTACACCCGCCTGGACGCCAGCCACTACCTCTACGAGAACCTCGAAGGCAGCGCGTTCAAGGCGGTA
CTGCTGGTGGACGAACAGGGCCTGGTGATCGACTACCCGGGTCTCTTCCAGCGTCTCTGA