ViewGene

Locus Name:
GeneID:
Location:

GeneID:3925
TrivialName: PA14_39150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39150
PAO1 Ortholog Locus:PA1962
Sequence Length:609
Protein Length:202
Start: 3488321
Stop: 3487713
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05350.1|AE004622_12 (AE004622) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 201/202 (99%), Positives = 201/202 (99%)
Sequence:
ATGAAACTTTTGCATATCGATTCCAGCATCCTCGGCGACGCCTCCGCTTCCCGCCAACTGAGCGCCGAGCTG
GTCCAGGCCTGGCGGCAGAACGAAGACGGGCTTGACGTCACCTACCGCGACCTGGCCGCCGACGCGGTGGCG
CATTTCTCCGCCCTGACCCTGGCCGCCGGCAGCACCCCGGCGGAGCTGCGCGATGCCGCGCTGAAGCATGAA
GTCGCGGTGGGTGAAGAAGTGCTGGAAGAGTTCCTCGCCGCCGACGTCGTGGTCATCGGCGCGCCGATGTAC
AACTTCACCATCTCCAGCCAGCTCAAGGcCTGGATCGATCGCATCGCGGTCGCCGGCAAGACCTTcCGCTAC
ACCGAGAACGGCCCGGTTGGCCTGGCCGGCGACAAGAAGGTGGTGATCGTTTCCACCGCCGGTGGCGTGCAT
GCCGGCCAGCCGACCGGCGCGGCCCACGAAGGCTACCTGCGCACCGTGCTGGGCTTCTTCGGCATCACCGAT
ATCGAAGTGGTTCGCGCCGAAGGCCTGGCCTATGGCGAGGAGCCCCGCGCCCAGGCCATCGCCGCCGCCCGC
CGGCAGATCGCCGGGCAGTTCGCCGCGGCCTGA
Translation:
MKLLHIDSSILGDASASRQLSAELVQAWRQNEDGLDVTYRDLAADAVAHFSALTLAAGSTPAELRDAALKHE
VAVGEEVLEEFLAADVVVIGAPMYNFTISSQLKAWIDRIAVAGKTFRYTENGPVGLAGDKKVVIVSTAGGVH
AGQPTGAAHEGYLRTVLGFFGITDIEVVRAEGLAYGEEPRAQAIAAARRQIAGQFAAA*
AnnotationID:3932GeneID:3925
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:36
Gene Name:
Confidence Code:3
GeneProduct:putative acyl carrier protein phosphodiesterase
Cell Localization:()
Synonyms:acpD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1182
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68474.1|AE016480_1 (AE016784) acyl carrier protein phosphodiesterase, putative
           [Pseudomonas putida KT2440]
          Length = 203

 Score =  283 bits (723), Expect = 6e-76
 Identities = 141/202 (69%), Positives = 164/202 (81%)

>emb|CAC45915.1| (AL591787) PROBABLE ACYL CARRIER PROTEIN PHOSPHODIESTERASE
           [Sinorhizobium meliloti]
          Length = 206

 Score =  203 bits (516), Expect = 6e-52
 Identities = 109/200 (54%), Positives = 141/200 (70%), Gaps = 7/200 (3%)

>gb|AAM36522.1| (AE011797) acyl carrier protein phosphodiesterase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 193

 Score =  196 bits (499), Expect = 5e-50
 Identities = 110/202 (54%), Positives = 138/202 (68%), Gaps = 11/202 (5%)
Structural Features:
COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]
CD-Length = 202 residues,  98.0% aligned
Score =  234 bits (598), Expect = 6e-63
Identities = 96/198 (48%), Positives = 129/198 (65%), Gaps = 2/198 (1%)
Genomic Context:
Comment:
ReferenceID:7853
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24995
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32759
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3925_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3925

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6163 PA1962_tr translation of PA1962 202 99.50 99.50 0 999.0
171030 gb|AAG05350.1|AE004622_12 (AE004622) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 202 99.50 99.50 0 999.0
171031 gb|AAN68474.1|AE016480_1 (AE016784) acyl carrier protein phosphodiesterase, putative [Pseudomonas putida KT2440] 203 70.44 81.77 1 725.0
171032 gb|AAO56623.1| (AE016867) acyl carrier protein phosphodiesterase [Pseudomonas syringae pv. tomato str. DC3000] 202 63.36 77.72 0 652.0
171038 dbj|BAC50371.1| (AP005953) acyl-carrier-protein phosphodiesterase [Bradyrhizobium japonicum USDA 110] 208 54.32 63.46 12 485.0
GC ORFID: 46927How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1962Glimmer Score:
Start: 1465590Stop: 1466198
Length: 609
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1962 translation of PA1962Homolog Bit Score 389.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7255 (ORF: BLASTX 253.0), t_PA3223 (ORF: BLASTX 139.0), t_PA1962 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACTTTTGCATATCGATTCCAGCATCCTCGGCGACGCCTCCGCTTCCCGCCAACTGAGCGCCGAGCTG
GTCCAGGCCTGGCGGCAGAACGAAGACGGGCTTGACGTCACCTACCGCGACCTGGCCGCCGACGCGGTGGCG
CATTTCTCCGCCCTGACCCTGGCCGCCGGCAGCACCCCGGCGGAGCTGCGCGATGCCGCGCTGAAGCATGAA
GTCGCGGTGGGTGAAGAAGTGCTGGAAGAGTTCCTCGCCGCCGACGTCGTGGTCATCGGCGCGCCGATGTAC
AACTTCACCATCTCCAGCCAGCTCAAGGcCTGGATCGATCGCATCGCGGTCGCCGGCAAGACCTTcCGCTAC
ACCGAGAACGGCCCGGTTGGCCTGGCCGGCGACAAGAAGGTGGTGATCGTTTCCACCGCCGGTGGCGTGCAT
GCCGGCCAGCCGACCGGCGCGGCCCACGAAGGCTACCTGCGCACCGTGCTGGGCTTCTTCGGCATCACCGAT
ATCGAAGTGGTTCGCGCCGAAGGCCTGGCCTATGGCGAGGAGCCCCGCGCCCAGGCCATCGCCGCCGCCCGC
CGGCAGATCGCCGGGCAGTTCGCCGCGGCCTGA