ViewGene

Locus Name:
GeneID:
Location:

GeneID:3924
TrivialName: PA14_42820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42820
PAO1 Ortholog Locus:PA1677
Sequence Length:597
Protein Length:198
Start: 3806993
Stop: 3807589
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05066.1|AE004595_5 (AE004595) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/198 (98%), Positives = 197/198 (99%)
Sequence:
ATGCCTCATCCGCTCACCCTTTTGCAGATCAGCGGACGCGGCTACCCGCCAGCCCCCCTTCGGCAGAGCACC
TTGCTGATCATCGATGCCCAGGAAGAGTACCGCAGCGGCGCCCTGAGCCTGCCAGGCCTGGACGCTGCCGCC
GCGGAAATCGGCGTGCTGGTGCAGGCGGCCCGCGCCAACGGTACGCCCATCGTGCATGTGCGCCACCTGGGT
ATCCAGGGTGGCCTGTTCGATCCGCAGGGTCCGCGCGGCCAGTTCCTCCCGGAACTGCAACCGGAAGCCGGG
GAAAAGGTCGTGGAGAAACGCCTGCCCAATGCCTTCTCCGGCACCGAGCTGCACGACCTGCTGCAGAACCAC
GGCCGTCTCGACCTGATCGTCTGCGGTTTCATGACCCATTCCAGCGTCAGCACCACCGTGCGCGCGGCCAAG
GACTACGGCTACCGCTGCACCCTCGCCGACAGCGCCTGCGCCACCCGCGACATACCCACCCTGAACGGCGGG
GTCCTGAGCGCCGCGGACCTGCAACGCGCCGAGATCGCCGCCCTCGGCGACAACTTCGCGGCGATCGTCGCC
CAGGCCCGGGAACTGCTCTGA
Translation:
MPHPLTLLQISGRGYPPAPLRQSTLLIIDAQEEYRSGALSLPGLDAAAAEIGVLVQAARANGTPIVHVRHLG
IQGGLFDPQGPRGQFLPELQPEAGEKVVEKRLPNAFSGTELHDLLQNHGRLDLIVCGFMTHSSVSTTVRAAK
DYGYRCTLADSACATRDIPTLNGGVLSAADLQRAEIAALGDNFAAIVAQARELL*
AnnotationID:3931GeneID:3924
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 11:11:49
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase, isochorismatase family
Cell Localization:()
Synonyms:PA1677
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01014,cd00431
Secondary Functional Category(ies):
EC Number:3.3.2.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55557.1| (AE016863) isochorismatase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 196

 Score =  237 bits (604), Expect = 3e-62
 Identities = 119/185 (64%), Positives = 144/185 (77%), Gaps = 1/185 (0%)

>gb|AAN67445.1|AE016371_11 (AE016780) hydrolase, isochorismatase family [Pseudomonas putida
           KT2440]
          Length = 196

 Score =  233 bits (593), Expect = 7e-61
 Identities = 114/194 (58%), Positives = 141/194 (72%), Gaps = 1/194 (0%)

Structural Features:
cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. 
CD-Length = 155 residues,  99.4% aligned
Score =  168 bits (426), Expect = 5e-43

cd00431, Cysteine hydrolases
CD-Length = 161 residues,  91.9% aligned
Score =  122 bits (308), Expect = 2e-29
Genomic Context:
Comment:
ReferenceID:7851
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24993
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37194
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3924_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3924

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6162 PA1677_tr translation of PA1677 198 98.98 99.49 0 999.0
171026 gb|AAG05066.1|AE004595_5 (AE004595) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 198 98.98 99.49 0 999.0
171027 gb|AAO55557.1| (AE016863) isochorismatase family protein [Pseudomonas syringae pv. tomato str. DC3000] 198 61.61 75.75 2 606.0
171028 gb|AAN67445.1|AE016371_11 (AE016780) hydrolase, isochorismatase family [Pseudomonas putida KT2440] 198 57.57 71.71 2 593.0
171029 dbj|BAC50896.1| (AP005955) blr5631 [Bradyrhizobium japonicum USDA 110] 211 41.70 54.50 14 405.0
GC ORFID: 46926How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1677Glimmer Score:
Start: 1146916Stop: 1146320
Length: 597
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1677 translation of PA1677Homolog Bit Score 389.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene555 (ORF: BLASTX 227.0), t_PA1677 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTCATCCGCTCACCCTTTTGCAGATCAGCGGACGCGGCTACCCGCCAGCCCCCCTTCGGCAGAGCACC
TTGCTGATCATCGATGCCCAGGAAGAGTACCGCAGCGGCGCCCTGAGCCTGCCAGGCCTGGACGCTGCCGCC
GCGGAAATCGGCGTGCTGGTGCAGGCGGCCCGCGCCAACGGTACGCCCATCGTGCATGTGCGCCACCTGGGT
ATCCAGGGTGGCCTGTTCGATCCGCAGGGTCCGCGCGGCCAGTTCCTCCCGGAACTGCAACCGGAAGCCGGG
GAAAAGGTCGTGGAGAAACGCCTGCCCAATGCCTTCTCCGGCACCGAGCTGCACGACCTGCTGCAGAACCAC
GGCCGTCTCGACCTGATCGTCTGCGGTTTCATGACCCATTCCAGCGTCAGCACCACCGTGCGCGCGGCCAAG
GACTACGGCTACCGCTGCACCCTCGCCGACAGCGCCTGCGCCACCCGCGACATACCCACCCTGAACGGCGGG
GTCCTGAGCGCCGCGGACCTGCAACGCGCCGAGATCGCCGCCCTCGGCGACAACTTCGCGGCGATCGTCGCC
CAGGCCCGGGAACTGCTCTGA