ViewGene
Locus Name:
GeneID:
Location:

GeneID:3923
TrivialName: PA14_47660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47660
PAO1 Ortholog Locus:PA1280
Sequence Length:585
Protein Length:194
Start: 4243319
Stop: 4242735
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04669.1|AE004557_10 (AE004557) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/194 (97%), Positives = 191/194 (98%)
Sequence:
ATGAGCCTGCGCCTGGACCTCCTGCGGCATGGCGAAACCGAGTCCGGCGGCGGTTTCCGTGGCAGCCTCGAC
GACGCCTTGACCGCGCGTGGCTGGGCGCAGATGCGCACGGCGGTGGAAGGCGGACGCTGGGACCTGCTGGTC
AGCTCGCCATTGCAACGTTGCCGCGCCTTCGCCGAGGAACTGGCGCAGCGCCAGGGGATCGAGCTGGAACTG
GAAAACGATCTGCGCGAACTGCATTTCGGCGATTGGGAGGGGCGCTCGGCGGCCAGCCTGATGGACGGCCAC
AGCGAGGCGCTCGGCCGCTTCTGGGCCGATCCCTACGTCTTTACCCCGCCGGGCGGCGAGCCGCTGTCCGAG
TTCGAGGCGCGGGTGCTGGCCGCCCAGCGACGCCTGCGCCAGCGTCACGCCGGCCGTCGTGTGCTGCTGGTG
ACCCATGGCGGCGTCATCCGTCTGTTGCTCGCTCGCGCCCGTGGCTTGCCGCGCGAGCGCTTGCTGCAGGTG
GACGTCGGTCATGGCGCACTGTTCGGCCTGCGCGCCGGAGAGGGCGACGATCGCTGGCACGAATGCCGGGAA
GGGGAATAG
Translation:
MSLRLDLLRHGETESGGGFRGSLDDALTARGWAQMRTAVEGGRWDLLVSSPLQRCRAFAEELAQRQGIELEL
ENDLRELHFGDWEGRSAASLMDGHSEALGRFWADPYVFTPPGGEPLSEFEARVLAAQRRLRQRHAGRRVLLV
THGGVIRLLLARARGLPRERLLQVDVGHGALFGLRAGEGDDRWHECREGE*
AnnotationID:3930GeneID:3923
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 18:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative alpha-ribazole-5'-phosphate phosphatase
Cell Localization:()
Synonyms:cobC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0406,pfam00300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55236.1| (AE016861) alpha-ribazole-5'-phosphate phosphatase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 190

 Score =  251 bits (640), Expect = 2e-66
 Identities = 125/184 (67%), Positives = 145/184 (78%), Gaps = 1/184 (0%)

>gb|AAN67301.1|AE016356_9 (AE016780) alpha-ribazole-5'-phosphate phosphatase [Pseudomonas
           putida KT2440]
          Length = 188

 Score =  241 bits (616), Expect = 1e-63
 Identities = 122/178 (68%), Positives = 142/178 (79%), Gaps = 2/178 (1%)








 
Structural Features:
COG0406, GpmB, Fructose-2,6-bisphosphatase 
[Carbohydrate transport and metabolism]
CD-Length = 208 residues,  93.8% aligned
Score =  130 bits (327), Expect = 1e-31
Identities = 78/195 (40%), Positives = 108/195 (55%), Gaps = 7/195 (3%)

pfam00300, PGAM, Phosphoglycerate mutase family.
CD-Length = 197 residues,  92.4% aligned
Score =  113 bits (285), Expect = 1e-26
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 9/182 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7849




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24991




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37500




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3923_cdd.html


    		




 
URL:

















    ReferenceID:38028




  
Author/Investigator(s):
        Crouzet J, Cauchois L, Blanche F, Debussche L, Thibaut D, Rouyez MC, Rigault S, Mayaux JF, Cameron B.





  
Title:
        Nucleotide sequence of a Pseudomonas denitrificans 5.4-kilobase DNA fragment containing five cob genes and identification of structural genes encoding S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase and cobyrinic acid a,c-diamide synthase.




  
PubMed:
        2211520


MedLine:
        




    
Source:
J Bacteriol. 1990 Oct;172(10):5968-79.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2211520

















    ReferenceID:38029




  
Author/Investigator(s):
        O'Toole GA, Trzebiatowski JR, Escalante-Semerena JC.





  
Title:
        The cobC gene of Salmonella typhimurium codes for a novel phosphatase involved in the assembly of the nucleotide loop of cobalamin.




  
PubMed:
        7929373


MedLine:
        




    
Source:
J Biol Chem. 1994 Oct 21;269(42):26503-11.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7929373









           
Homologs By Global Alignment 

           

       



     
Gene ID:3923
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6161
                           PA1280_tr
                           translation of PA1280
                           194
                           97.93
                           98.45
                           0
                           999.0
     

     
     
171020
                           gb|AAG04669.1|AE004557_10
                           (AE004557) hypothetical protein PA1280 [Pseudomonas aeruginosa PAO1]
                           194
                           97.93
                           98.45
                           0
                           999.0
     

     
     
171022
                           emb|CAD44476.1|
                           (AJ297529) alpha-ribazole-5'-phosphate phosphatase [Pseudomonas stutzeri]
                           201
                           64.17
                           70.64
                           16
                           636.0
     

     
     
171023
                           gb|AAN67301.1|AE016356_9
                           (AE016780) alpha-ribazole-5'-phosphate phosphatase [Pseudomonas putida KT2440]
                           195
                           64.10
                           75.38
                           8
                           619.0
     

     
     
171021
                           gb|AAO55236.1|
                           (AE016861) alpha-ribazole-5'-phosphate phosphatase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           199
                           63.31
                           73.36
                           14
                           631.0
     

     






      

          
GC ORFID: 46925How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1280Glimmer Score: 

          
Start: 710590Stop: 711174

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1280 translation of PA1280Homolog Bit Score 389.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1366 (ORF: BLASTX 244.0), t_PA1280 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCGCCTGGACCTCCTGCGGCATGGCGAAACCGAGTCCGGCGGCGGTTTCCGTGGCAGCCTCGAC 
GACGCCTTGACCGCGCGTGGCTGGGCGCAGATGCGCACGGCGGTGGAAGGCGGACGCTGGGACCTGCTGGTC 
AGCTCGCCATTGCAACGTTGCCGCGCCTTCGCCGAGGAACTGGCGCAGCGCCAGGGGATCGAGCTGGAACTG 
GAAAACGATCTGCGCGAACTGCATTTCGGCGATTGGGAGGGGCGCTCGGCGGCCAGCCTGATGGACGGCCAC 
AGCGAGGCGCTCGGCCGCTTCTGGGCCGATCCCTACGTCTTTACCCCGCCGGGCGGCGAGCCGCTGTCCGAG 
TTCGAGGCGCGGGTGCTGGCCGCCCAGCGACGCCTGCGCCAGCGTCACGCCGGCCGTCGTGTGCTGCTGGTG 
ACCCATGGCGGCGTCATCCGTCTGTTGCTCGCTCGCGCCCGTGGCTTGCCGCGCGAGCGCTTGCTGCAGGTG 
GACGTCGGTCATGGCGCACTGTTCGGCCTGCGCGCCGGAGAGGGCGACGATCGCTGGCACGAATGCCGGGAA 
GGGGAATAG