ViewGene
Locus Name:
GeneID:
Location:

GeneID:3922
TrivialName: PA14_48420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48420
PAO1 Ortholog Locus:PA1226
Sequence Length:609
Protein Length:202
Start: 4306051
Stop: 4305443
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04615.1|AE004552_5 (AE004552) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 202/202 (100%), Positives = 202/202 (100%)
Sequence:
ATGTCAATGCACTCCCCAGACGACCCGTCGCCACGCCGCCGCCTGTCCCGCGACGAGCGCCAGCGCCAGTTG
CTCGAGGTGGCCTGGCGGCTGGTCCGCGAAGAAGGCACCGAGGCGCTGACCCTCGGTCGCCTGGCCGAGCAG
GCCGGGGTGACCAAGCCGGTGGTCTATGACCACTTCGGCACCCGCGCCGGCCTGCTGGCGGCGCTCTACCAG
GATTACGACCTGCGCCAGACGGCGCTGATGGAGGCTGCCCTGGAAGCGAGCGAGGCGACCCTGGAGGGGCGC
GCTGACGTCATCGCCCGCGCCTATGTCGACTGCGTGATGCAACAAGGCCGGGAGATTCCCGGGGTGGTCGCG
GCCCTCGCCAGCTCGCCGGAGCTGGAGCGGATCAAGCGCGACTACGAGGTTCTCTTCATGGACAAGTGCCGC
GCCGTGCTGGAGCCCTTCGCCGGCGGCGGACGGCTGACCGTCGCCGCTCTGCGCGCAATGATCGGCGCCGCC
GAAGCGCTGTCGCACGCGGCCGCCACCGAAGAGATCGCCCCGGAAGAGGCGCGGCGGGAACTGTACGAGGCG
ATCGTGGCGATGGTCGCGCGGAGTCGTCGGTGA
Translation:
MSMHSPDDPSPRRRLSRDERQRQLLEVAWRLVREEGTEALTLGRLAEQAGVTKPVVYDHFGTRAGLLAALYQ
DYDLRQTALMEAALEASEATLEGRADVIARAYVDCVMQQGREIPGVVAALASSPELERIKRDYEVLFMDKCR
AVLEPFAGGGRLTVAALRAMIGAAEALSHAAATEEIAPEEARRELYEAIVAMVARSRR*
AnnotationID:3929GeneID:3922
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 07:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1226
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK64777.1| (AE007206) putative  transcriptional regulator [Sinorhizobium
           meliloti]
          Length = 204

 Score =  233 bits (594), Expect = 5e-61
 Identities = 118/192 (61%), Positives = 150/192 (78%)

>gb|AAM37081.1| (AE011860) transcriptional regulator tetR family [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 203

 Score =  215 bits (547), Expect = 1e-55
 Identities = 109/195 (55%), Positives = 148/195 (75%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 48.0 bits (115), Expect = 7e-07
Identities = 19/47 (40%), Positives = 30/47 (63%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7847




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24989




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37529




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3922_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3922
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6160
                           PA1226_tr
                           translation of PA1226
                           202
                           99.99
                           99.99
                           0
                           1000.0
     

     
     
171016
                           gb|AAG04615.1|AE004552_5
                           (AE004552) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           202
                           99.99
                           99.99
                           0
                           1000.0
     

     
     
171017
                           gb|AAK64777.1|
                           (AE007206) putative  transcriptional regulator [Sinorhizobium meliloti]
                           204
                           58.82
                           75.00
                           2
                           588.0
     

     
     
171018
                           emb|CAE45108.1|
                           (AJ579894) TetR-like transcriptional regulator [Pseudomonas sp. Y2]
                           203
                           55.66
                           72.41
                           10
                           558.0
     

     
     
171019
                           gb|AAM37081.1|
                           (AE011860) transcriptional regulator tetR family [Xanthomonas axonopodis pv. citri str. 306]
                           207
                           53.62
                           72.46
                           9
                           546.0
     

     






      

          
GC ORFID: 46924How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1226Glimmer Score: 

          
Start: 647857Stop: 648465

          
Length: 609


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1226 translation of PA1226Homolog Bit Score 389.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4008 (ORF: BLASTX 239.0), t_PA1226 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAATGCACTCCCCAGACGACCCGTCGCCACGCCGCCGCCTGTCCCGCGACGAGCGCCAGCGCCAGTTG 
CTCGAGGTGGCCTGGCGGCTGGTCCGCGAAGAAGGCACCGAGGCGCTGACCCTCGGTCGCCTGGCCGAGCAG 
GCCGGGGTGACCAAGCCGGTGGTCTATGACCACTTCGGCACCCGCGCCGGCCTGCTGGCGGCGCTCTACCAG 
GATTACGACCTGCGCCAGACGGCGCTGATGGAGGCTGCCCTGGAAGCGAGCGAGGCGACCCTGGAGGGGCGC 
GCTGACGTCATCGCCCGCGCCTATGTCGACTGCGTGATGCAACAAGGCCGGGAGATTCCCGGGGTGGTCGCG 
GCCCTCGCCAGCTCGCCGGAGCTGGAGCGGATCAAGCGCGACTACGAGGTTCTCTTCATGGACAAGTGCCGC 
GCCGTGCTGGAGCCCTTCGCCGGCGGCGGACGGCTGACCGTCGCCGCTCTGCGCGCAATGATCGGCGCCGCC 
GAAGCGCTGTCGCACGCGGCCGCCACCGAAGAGATCGCCCCGGAAGAGGCGCGGCGGGAACTGTACGAGGCG 
ATCGTGGCGATGGTCGCGCGGAGTCGTCGGTGA