ViewGene
Locus Name:
GeneID:
Location:

GeneID:3921
TrivialName: PA14_51790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51790
PAO1 Ortholog Locus:PA0966
Sequence Length:606
Protein Length:201
Start: 4599862
Stop: 4599257
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04355.1|AE004530_8 (AE004530) Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
Identities = 201/201 (100%), Positives = 201/201 (100%)
Sequence:
GTGATCGGACGCTTGCGTGGCACCCTGGCGGAGAAACAGCCGCCGCACCTGATCCTCGATGTGAATGGCGTC
GGCTATGAAGTGGAAGTGCCGATGACGACCCTCTATCGGTTGCCTTCGGTAGGCGAGCCGGTGACCTTGCAT
ACCCATCTGGTTGTGCGTGAGGATGCGCACTTGCTCTATGGCTTCGCCGAAAAGCGCGAGCGAGAGCTGTTC
CGTGAGCTGATCCGACTCAACGGCGTGGGTCCGAAACTGGCTCTGGCGCTGATGTCGGGCCTGGAAGTGGAC
GAACTGGTGCGTTGCGTCCAGGCACAGGACACCTCAACCCTGGTGAAGATCCCCGGTGTTGGCAAGAAGACC
GCCGAGCGCCTGCTGGTGGAGTTGAAGGACCGCTTCAAGGCTTGGGAAAACATGCCCACGATTGCACCGTTG
GTGATGGAACCCCGTGCCAGCGCTACAGTCTCAAGCGCCGAGGCCGATGCAGTCAGCGCGCTGATCGCCCTC
GGCTTCAAGCCACAGGAAGCCAGTCGTGCCGTCGCAGCCGTACCGGGAGAGGATTTGTCCAGCGAAGAAATG
ATCCGCCAGGCCCTGAAGGGCATGGTCTAG
Translation:
MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLLYGFAEKRERELF
RELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKTAERLLVELKDRFKAWENMPTIAPL
VMEPRASATVSSAEADAVSALIALGFKPQEASRAVAAVPGEDLSSEEMIRQALKGMV*
AnnotationID:3928GeneID:3921
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:31
Gene Name:ruvA
Confidence Code:1
GeneProduct:Holliday junction DNA helicase RuvA
Cell Localization:()
Synonyms:PA0966
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0632, RuvA, Holliday junction resolvasome, DNA-binding subunit [DNA replication,
recombination, and repair].
       CD-Length = 201 residues, 100.0% aligned
       Score =  238 bits (610), Expect = 3e-64






   
Genomic Context:
operon:orf26, ruvCAB






   
Comment:


















    ReferenceID:14963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24987




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32060




  
Author/Investigator(s):
        Hishida T, Iwasaki H, Ishioka K, Shinagawa H.





  
Title:
        Molecular analysis of the Pseudomonas aeruginosa genes, ruvA, ruvB and ruvC, involved in processing of homologous recombination intermediates.




  
PubMed:
        97136691


MedLine:
        




    
Source:
Gene. 1996 Dec 5;182(1-2):63-70.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3921
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6159
                           PA0966_tr
                           translation of PA0966
                           201
                           99.99
                           99.99
                           0
                           998.0
     

     
     
170970
                           gb|AAG04355.1|AE004530_8
                           (AE004530) Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
                           201
                           99.50
                           99.99
                           0
                           995.0
     

     
     
170971
                           dbj|BAA11818.1|
                           (D83138) Holliday junction binding protein [Pseudomonas aeruginosa]
                           201
                           99.50
                           99.99
                           0
                           995.0
     

     
     
170972
                           gb|AAN66840.1|AE016312_11
                           (AE016778) Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
                           205
                           80.48
                           90.24
                           4
                           826.0
     

     
     
170973
                           gb|AAO57437.1|
                           (AE016870) Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000]
                           202
                           80.19
                           89.60
                           1
                           810.0
     

     






      

          
GC ORFID: 46923How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0966Glimmer Score: 

          
Start: 354045Stop: 354650

          
Length: 606


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0966 translation of PA0966Homolog Bit Score 389.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4686 (ORF: BLASTX 320.0), t_PA0966 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCGGACGCTTGCGTGGCACCCTGGCGGAGAAACAGCCGCCGCACCTGATCCTCGATGTGAATGGCGTC 
GGCTATGAAGTGGAAGTGCCGATGACGACCCTCTATCGGTTGCCTTCGGTAGGCGAGCCGGTGACCTTGCAT 
ACCCATCTGGTTGTGCGTGAGGATGCGCACTTGCTCTATGGCTTCGCCGAAAAGCGCGAGCGAGAGCTGTTC 
CGTGAGCTGATCCGACTCAACGGCGTGGGTCCGAAACTGGCTCTGGCGCTGATGTCGGGCCTGGAAGTGGAC 
GAACTGGTGCGTTGCGTCCAGGCACAGGACACCTCAACCCTGGTGAAGATCCCCGGTGTTGGCAAGAAGACC 
GCCGAGCGCCTGCTGGTGGAGTTGAAGGACCGCTTCAAGGCTTGGGAAAACATGCCCACGATTGCACCGTTG 
GTGATGGAACCCCGTGCCAGCGCTACAGTCTCAAGCGCCGAGGCCGATGCAGTCAGCGCGCTGATCGCCCTC 
GGCTTCAAGCCACAGGAAGCCAGTCGTGCCGTCGCAGCCGTACCGGGAGAGGATTTGTCCAGCGAAGAAATG 
ATCCGCCAGGCCCTGAAGGGCATGGTCTAG