ViewGene
Locus Name:
GeneID:
Location:

GeneID:3920
TrivialName: PA14_44610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44610
PAO1 Ortholog Locus:PA1534
Sequence Length:597
Protein Length:198
Start: 3971038
Stop: 3970442
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04923.1|AE004582_1 (AE004582) recombination protein RecR [Pseudomonas aeruginosa PAO1]
Identities = 197/198 (99%), Positives = 198/198 (100%)
Sequence:
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCG
GCCCAGCGCATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACC
GCCGCGATGGAAGGGGTCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGC
GCCGACCCGCGACGCGACGACTCGCTGCTCTGCGTGGTGGAAGGCCCTCTGGACGTATTCGCGGTGGAGCAG
ACCGGCTACCGCGGCCGCTATTTCGTGCTCAAGGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCG
ATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAGCCTTCAGCGAGGTGATCCTCGCCACCAACCCC
ACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCCGGCCGCGGCCTGACCTTGTCGCGT
ATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTTGGCCCACGCCCTGGCC
GGACGGCGGCCGATCTCCTGA
Translation:
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRRCRTLSEEELCPQC
ADPRRDDSLLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNP
TVEGEATAHYIAQLLAGRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS*
AnnotationID:3927GeneID:3920
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:39
Gene Name:recR
Confidence Code:2
GeneProduct:recombination protein RecR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0353
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69847.1|AE016623_9 (AE016790) recombination protein RecR [Pseudomonas putida KT2440]
          Length = 200

 Score =  347 bits (889), Expect = 3e-95
 Identities = 172/199 (86%), Positives = 186/199 (93%), Gaps = 1/199 (0%)

>gb|AAO57109.1| (AE016869) recombination protein RecR [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 200

 Score =  322 bits (826), Expect = 6e-88
 Identities = 160/199 (80%), Positives = 179/199 (89%), Gaps = 1/199 (0%)

>gb|AAG54821.1|AE005226_4 (AE005226) recombination and repair [Escherichia coli O157:H7
           EDL933]
          Length = 201

 Score =  256 bits (653), Expect = 7e-68
 Identities = 127/199 (63%), Positives = 159/199 (79%), Gaps = 2/199 (1%)






 
Structural Features:
COG0353, RecR, Recombinational DNA repair protein (RecF pathway) 
[DNA replication, recombination, and repair]
CD-Length = 198 residues, 100.0% aligned
Score =  288 bits (739), Expect = 3e-79
Identities = 115/198 (58%), Positives = 142/198 (71%), Gaps = 1/198 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37317




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3920_cdd.html


    		




 
URL:

















    ReferenceID:37935




  
Author/Investigator(s):
        Yeung T, Mullin DA, Chen KS, Craig EA, Bardwell JC, Walker JR.





  
Title:
        Sequence and expression of the Escherichia coli recR locus.




  
PubMed:
        1698765


MedLine:
        




    
Source:
J Bacteriol. 1990 Oct;172(10):6042-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1698765

















    ReferenceID:37936




  
Author/Investigator(s):
        Pelaez AI, Ribas-Aparicio RM, Gomez A, Rodicio MR.





  
Title:
        Structural and functional characterization of the recR gene of Streptomyces.




  
PubMed:
        11459186


MedLine:
        




    
Source:
Mol Genet Genomics. 2001 Jun;265(4):663-72.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11459186

















    ReferenceID:37937




  
Author/Investigator(s):
        Mahdi AA, Lloyd RG.





  
Title:
        The recR locus of Escherichia coli K-12: molecular cloning, DNA sequencing and identification of the gene product.




  
PubMed:
        2674903


MedLine:
        




    
Source:
Nucleic Acids Res. 1989 Sep 12;17(17):6781-94.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2674903









           
Homologs By Global Alignment 

           

       



     
Gene ID:3920
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6158
                           PA1534_tr
                           translation of PA1534
                           198
                           99.49
                           99.99
                           0
                           1003.0
     

     
     
170872
                           gb|AAG04923.1|AE004582_1
                           (AE004582) recombination protein RecR [Pseudomonas aeruginosa PAO1]
                           198
                           99.49
                           99.99
                           0
                           1003.0
     

     
     
170873
                           gb|AAN69847.1|AE016623_9
                           (AE016790) recombination protein RecR [Pseudomonas putida KT2440]
                           200
                           86.00
                           93.00
                           2
                           891.0
     

     
     
170874
                           gb|AAO57109.1|
                           (AE016869) recombination protein RecR [Pseudomonas syringae pv. tomato str. DC3000]
                           200
                           80.00
                           89.50
                           2
                           828.0
     

     
     
170882
                           gb|AAC73574.1|
                           (AE000153) recombination and repair [Escherichia coli K12]
                           201
                           63.18
                           79.10
                           3
                           656.0
     

     






      

          
GC ORFID: 46922How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1534Glimmer Score: 

          
Start: 982871Stop: 983467

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1534 translation of PA1534Homolog Bit Score 390.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2224 (ORF: BLASTX 335.0), t_PA1534 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCG 
GCCCAGCGCATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACC 
GCCGCGATGGAAGGGGTCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGC 
GCCGACCCGCGACGCGACGACTCGCTGCTCTGCGTGGTGGAAGGCCCTCTGGACGTATTCGCGGTGGAGCAG 
ACCGGCTACCGCGGCCGCTATTTCGTGCTCAAGGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCG 
ATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAGCCTTCAGCGAGGTGATCCTCGCCACCAACCCC 
ACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCCGGCCGCGGCCTGACCTTGTCGCGT 
ATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTTGGCCCACGCCCTGGCC 
GGACGGCGGCCGATCTCCTGA