ViewGene
Locus Name:
GeneID:
Location:

GeneID:3919
TrivialName: PA14_54240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54240
PAO1 Ortholog Locus:PA0776
Sequence Length:573
Protein Length:190
Start: 4813655
Stop: 4814227
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04165.1|AE004512_8 (AE004512) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
ATGGGCACCGCTCTTCGTTACTCACTGCTCTGGGCATCCACTGTCTTCGTTTCCTCCTGCGGCAGCCTGCTG
CCCAGCGAACGAGCGGAAGTCCAATCCCCCTTCGTCGACTACCTCGATGCCGAACTGCGCTATTCCCAGGCG
CAACCCGGCAGCACGACCCGTTCGCAGCTGTTCGGGTTGGGTTTCGATCCATTGACCCAGGGCAACGGCCGC
ATGCTGTCGTTCATCGACGTGCGGCTCATGTTCATCCAGCCGAACATCCCCATCGATTACCTGCCGGGCGGC
CTGGTGCAATGCCTGGAAGCGAAGGACCGCTGCATCGGCTACGCCTTCGATTTCAGCAAGACCGACACCCAG
CGGGTCGGCAGCTTCTGGGCGGACGTGTTCAACTTCCGCAAGAAACGGGAGTTGCAGGGCTGGTCGTTCAAG
GCAGTGTTCGTCTTCGTCAACGACGTGCTGGTGCACAAGGTCAGCAACGGCGAACCGAACATCCATCGCCTG
GAAGACAAGAAGAACCCGCTGGGTCCGCTGCAGGGCGCGGGAGAGTACTTCTCCGACAAGCTCAGGTGA
Translation:
MGTALRYSLLWASTVFVSSCGSLLPSERAEVQSPFVDYLDAELRYSQAQPGSTTRSQLFGLGFDPLTQGNGR
MLSFIDVRLMFIQPNIPIDYLPGGLVQCLEAKDRCIGYAFDFSKTDTQRVGSFWADVFNFRKKRELQGWSFK
AVFVFVNDVLVHKVSNGEPNIHRLEDKKNPLGPLQGAGEYFSDKLR*
AnnotationID:3926GeneID:3919
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0776
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7841




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3919
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6157
                           PA0776_tr
                           translation of PA0776
                           190
                           99.99
                           99.99
                           0
                           1001.0
     

     
     
170871
                           gb|AAG04165.1|AE004512_8
                           (AE004512) hypothetical protein PA0776 [Pseudomonas aeruginosa PAO1]
                           190
                           99.99
                           99.99
                           0
                           1001.0
     

     






      

          
GC ORFID: 46921How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0776Glimmer Score: 

          
Start: 140252Stop: 139680

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0776 translation of PA0776Homolog Bit Score 390.0

          
Other Homologs:  t_PA0776 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCACCGCTCTTCGTTACTCACTGCTCTGGGCATCCACTGTCTTCGTTTCCTCCTGCGGCAGCCTGCTG 
CCCAGCGAACGAGCGGAAGTCCAATCCCCCTTCGTCGACTACCTCGATGCCGAACTGCGCTATTCCCAGGCG 
CAACCCGGCAGCACGACCCGTTCGCAGCTGTTCGGGTTGGGTTTCGATCCATTGACCCAGGGCAACGGCCGC 
ATGCTGTCGTTCATCGACGTGCGGCTCATGTTCATCCAGCCGAACATCCCCATCGATTACCTGCCGGGCGGC 
CTGGTGCAATGCCTGGAAGCGAAGGACCGCTGCATCGGCTACGCCTTCGATTTCAGCAAGACCGACACCCAG 
CGGGTCGGCAGCTTCTGGGCGGACGTGTTCAACTTCCGCAAGAAACGGGAGTTGCAGGGCTGGTCGTTCAAG 
GCAGTGTTCGTCTTCGTCAACGACGTGCTGGTGCACAAGGTCAGCAACGGCGAACCGAACATCCATCGCCTG 
GAAGACAAGAAGAACCCGCTGGGTCCGCTGCAGGGCGCGGGAGAGTACTTCTCCGACAAGCTCAGGTGA