ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3918

TrivialName: PA14_55580

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55580

PAO1 Ortholog Locus: PA0672

Sequence Length: 597

Protein Length: 198

Start: 4946322

Stop: 4945726

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04061.1|AE004502_4 (AE004502) heme oxygenase [Pseudomonas aeruginosa PAO1] Identities = 198/198 (100%), Positives = 198/198 (100%)

Sequence:

ATGGATACCCTGGCCCCTGAATCCACTCGGCAAAACCTGCGTTCGCAACGCCTCAACCTGCTGACCAACGAG
CCGCACCAGCGCCTGGAGAGCCTGGTGAAGAGCAAGGAACCCTTCGCCAGCCGGGACAATTTCGCCCGCTTC
GTCGCCGCCCAGTACCTCTTCCAGCATGACCTGGAGCCGCTTTATCGCAACGAAGCGCTGGCCCGCCTGTTC
CCCGGCCTGGCTTCCCGCGCCCGCGACGACGCCGCTCGTGCAGACCTGGCGGACCTCGGCCATCCGGTGCCG
GAGGGCGACCAGAGCGTGCGCGAGGCCGACCTGAGCCTGGCCGAGGCACTGGGCTGGCTGTTCGTTTCCGAA
GGTTCGAAGCTGGGCGCTGCGTTCCTGTTCAAGAAAGCCGCCGCGCTCGAACTCGACGAGAACTTCGGCGCC
CGCCATCTGGCCGAGCCGGAAGGCGGCCGCGCGCAAGGCTGGAAGAGCTTCGTGGCGATCCTCGACGGCATC
GAGCTGAACGAGGAGGAAGAGCGCCTGGCCGCCAAGGGCGCCAGCGATGCCTTCAATCGTTTCGGCGACCTG
CTGGAGCGTACCTTCGCCTGA

Translation:

MDTLAPESTRQNLRSQRLNLLTNEPHQRLESLVKSKEPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLF
PGLASRARDDAARADLADLGHPVPEGDQSVREADLSLAEALGWLFVSEGSKLGAAFLFKKAAALELDENFGA
RHLAEPEGGRAQGWKSFVAILDGIELNEEEERLAAKGASDAFNRFGDLLERTFA*

AnnotationID:3925 GeneID:3918

AnnotatorUID: danlee

Modification Date/Time: 2004-03-11 13:01:24

Gene Name: nemO

Confidence Code: 2

GeneProduct: heme oxygenase

Cell Localization: ()

Synonyms: PA0672, pigA

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (4) Biosynthesis of cofactors, prosthetic groups and carriers

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:7839

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24981

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3918

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6156 PA0672_tr translation of PA0672 198 99.99 99.99 0 1002.0

170863 gb|AAG04061.1|AE004502_4 (AE004502) heme oxygenase [Pseudomonas aeruginosa PAO1] 198 99.99 99.99 0 1002.0

170864 gb|AAC15188.1| (AF060193) iron-starvation protein PigA [Pseudomonas aeruginosa] 198 99.99 99.99 0 1002.0

170865 gb|AAN66630.1|AE016290_8 (AE016777) heme oxygenase [Pseudomonas putida KT2440] 204 52.94 64.21 13 522.0

170869 gb|AAN68190.1|AE016452_3 (AE016783) heme oxygenase, putative [Pseudomonas putida KT2440] 200 42.00 56.50 6 359.0

GC ORFID: `46920`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0672`	Glimmer Score:
Start: `7585`	Stop: `8181`
Length: `597`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0672 translation of PA0672`	Homolog Bit Score `390.0`
Other Homologs: `psyr_15may02_Scaffold3_revised_gene4958 (ORF: BLASTX 183.0), t_PA0672 (ORF: GLIMMER)`
GC ORF Sequence
ATGGATACCCTGGCCCCTGAATCCACTCGGCAAAACCTGCGTTCGCAACGCCTCAACCTGCTGACCAACGAG CCGCACCAGCGCCTGGAGAGCCTGGTGAAGAGCAAGGAACCCTTCGCCAGCCGGGACAATTTCGCCCGCTTC GTCGCCGCCCAGTACCTCTTCCAGCATGACCTGGAGCCGCTTTATCGCAACGAAGCGCTGGCCCGCCTGTTC CCCGGCCTGGCTTCCCGCGCCCGCGACGACGCCGCTCGTGCAGACCTGGCGGACCTCGGCCATCCGGTGCCG GAGGGCGACCAGAGCGTGCGCGAGGCCGACCTGAGCCTGGCCGAGGCACTGGGCTGGCTGTTCGTTTCCGAA GGTTCGAAGCTGGGCGCTGCGTTCCTGTTCAAGAAAGCCGCCGCGCTCGAACTCGACGAGAACTTCGGCGCC CGCCATCTGGCCGAGCCGGAAGGCGGCCGCGCGCAAGGCTGGAAGAGCTTCGTGGCGATCCTCGACGGCATC GAGCTGAACGAGGAGGAAGAGCGCCTGGCCGCCAAGGGCGCCAGCGATGCCTTCAATCGTTTCGGCGACCTG CTGGAGCGTACCTTCGCCTGA