ViewGene

Locus Name:
GeneID:
Location:

GeneID:3917
TrivialName: PA14_05500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05500
PAO1 Ortholog Locus:PA0422
Sequence Length:570
Protein Length:189
Start: 484832
Stop: 485401
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03811.1|AE004479_6 (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
ATGCAGTGGCGCAATACCTCATCCCGTTACGGCGTATTCAGCCTGTTCCTGCACTGGGGCAGCGCGCTGGTG
GTCTTCGGCCTGTTCGGCCTGGGCCTGTGGATGCGCGAACTGAGCTATTACGACCCCTGGTACCACCCCGCG
CCGGCGCTGCATAAAAGCATCGGCATCCTGCTGGCCATCGCCCTGCTGGTGCGGATCGTCTGGCGTTTCGTC
AGCCCGCCGCCGCCGGCGCCGGCCAACCACGGTCCGCTCACGCGGGTAGCGAGCAAGCTCGGCCACCTCGCG
CTGTACGGGCTGCTGCTGGCGGTGATCGTCGCGGGCTACCTGATTTCCACCGCCGACGGCGAACCGATCAGC
GTATTCGGCTGGTTCTCCGTGCCGGCGACCCTCAGCGGGCTGCCCGACCAGGCGGACGTCGCGGGTGAAATC
CATCTCTACCTGGCCTGGGCGCTGGTGGTCTTCGCCGTCCTCCATGCCCTGGCCGCCCTCAAGCATCACTTC
GTCGACCGCGACCCGACCCTAAAGCGCATGCTCGGTCGCTCGTCGAATGATCAACAACCACGTTAA
Translation:
MQWRNTSSRYGVFSLFLHWGSALVVFGLFGLGLWMRELSYYDPWYHPAPALHKSIGILLAIALLVRIVWRFV
SPPPPAPANHGPLTRVASKLGHLALYGLLLAVIVAGYLISTADGEPISVFGWFSVPATLSGLPDQADVAGEI
HLYLAWALVVFAVLHALAALKHHFVDRDPTLKRMLGRSSNDQQPR*
AnnotationID:3924GeneID:3917
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 09:09:42
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome b561
Cell Localization:()
Synonyms:PA0422
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3038,pfam01292
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL20088.1| (AE008750) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 190

 Score =  251 bits (640), Expect = 2e-66
 Identities = 115/185 (62%), Positives = 145/185 (78%)

>dbj|BAB34858.1| (AP002555) putative cytochrome [Escherichia coli O157:H7]
          Length = 188

 Score =  251 bits (640), Expect = 2e-66
 Identities = 114/185 (61%), Positives = 145/185 (78%)

>gb|AAN42686.1|AE015134_3 (AE015134) putative cytochrome [Shigella flexneri 2a str. 301]
          Length = 192

 Score =  247 bits (631), Expect = 2e-65
 Identities = 113/185 (61%), Positives = 144/185 (77%)
Structural Features:
COG3038, CybB, Cytochrome B561 [Energy production and conversion]
CD-Length = 181 residues, 100.0% aligned
Score =  192 bits (489), Expect = 3e-50
Identities = 94/181 (51%), Positives = 116/181 (64%)

pfam01292, Ni_hydr_CYTB, Cytochrome b561 family. 
CD-Length = 174 residues, 100.0% aligned
Score =  153 bits (387), Expect = 2e-38
Identities = 74/175 (42%), Positives = 95/175 (54%), Gaps = 1/175 (0%)
Genomic Context:
Comment:
ReferenceID:7837
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24979
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33741
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3917_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3917

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6155 PA0422_tr translation of PA0422 189 99.99 99.99 0 1001.0
170841 gb|AAG03811.1|AE004479_6 (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 189 99.99 99.99 0 1001.0
170842 gb|AAN70548.1|AE016697_3 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 189 68.78 78.30 6 694.0
170854 gb|AAO58499.1| (AE016874) cytochrome b561, putative [Pseudomonas syringae pv. tomato str. DC3000] 191 60.73 71.20 9 617.0
170844 gb|AAL20088.1| (AE008750) putative inner membrane protein [Salmonella typhimurium LT2] 190 60.52 76.84 1 637.0
GC ORFID: 46919How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0422Glimmer Score:
Start: 6286174Stop: 6286743
Length: 570
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0422 translation of PA0422Homolog Bit Score 390.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3330 (ORF: BLASTX 244.0), t_PA0422 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTGGCGCAATACCTCATCCCGTTACGGCGTATTCAGCCTGTTCCTGCACTGGGGCAGCGCGCTGGTG
GTCTTCGGCCTGTTCGGCCTGGGCCTGTGGATGCGCGAACTGAGCTATTACGACCCCTGGTACCACCCCGCG
CCGGCGCTGCATAAAAGCATCGGCATCCTGCTGGCCATCGCCCTGCTGGTGCGGATCGTCTGGCGTTTCGTC
AGCCCGCCGCCGCCGGCGCCGGCCAACCACGGTCCGCTCACGCGGGTAGCGAGCAAGCTCGGCCACCTCGCG
CTGTACGGGCTGCTGCTGGCGGTGATCGTCGCGGGCTACCTGATTTCCACCGCCGACGGCGAACCGATCAGC
GTATTCGGCTGGTTCTCCGTGCCGGCGACCCTCAGCGGGCTGCCCGACCAGGCGGACGTCGCGGGTGAAATC
CATCTCTACCTGGCCTGGGCGCTGGTGGTCTTCGCCGTCCTCCATGCCCTGGCCGCCCTCAAGCATCACTTC
GTCGACCGCGACCCGACCCTAAAGCGCATGCTCGGTCGCTCGTCGAATGATCAACAACCACGTTAA