ViewGene
Locus Name:
GeneID:
Location:

GeneID:3916
TrivialName: PA14_67450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67450
PAO1 Ortholog Locus:PA5107
Sequence Length:570
Protein Length:189
Start: 6023783
Stop: 6023214
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08492.1|AE004923_8 (AE004923) outer membrane lipoprotein Blc [Pseudomonas aeruginosa PAO1]
Identities = 186/189 (98%), Positives = 187/189 (98%)
Sequence:
GTGATCGGTCTGCCGATCCGGGTGCTCTGCACCCTGTGGCTGGGCTTGCTGCTGGTCGGTTGCGCGGGCTCG
CCGAAGAATCCGCCGGCCACCGAGCAGGTCGACCTCCAGCGCTACCAGGGCACCTGGTACGAACTGGCGCGC
TTGCCGATGTTCTTCCAGCGCAACTGCGCGCAATCGGAAGCGCATTACCGCTTGCAGGAAGACCAGAGCATC
CAGGTGATCAACCGCTGCCTGACCCGGGATGGCGAGTGGGAGCAGGTGGAGGGGCGGGCGGTCGCCCAGCAG
CCAGGCCGCACCGACAAGTTGTGGGTGCGCTTCGACAACTGGTTCGCCAATCTCTTCCCCAACGTGGCGCGC
GGCGACTATTGGGTGCTGGCGGTGGACGACGACTACCGCACCGCGCTGGTGGGCAATCCGAACCGTGAATAC
CTGTGGCTGCTGTCGCGTACCCCGCAGGTTTCGCAGCAGACCCGCGAGCGTCTGCTGGAAGAAGCGCGCAGC
CGCGGTTACGCGGTGGACGAGCTGATCTGGCGGGTACCCGACGGCCAGTTGAAGCGGAGCCAGTGA
Translation:
MIGLPIRVLCTLWLGLLLVGCAGSPKNPPATEQVDLQRYQGTWYELARLPMFFQRNCAQSEAHYRLQEDQSI
QVINRCLTRDGEWEQVEGRAVAQQPGRTDKLWVRFDNWFANLFPNVARGDYWVLAVDDDYRTALVGNPNREY
LWLLSRTPQVSQQTRERLLEEARSRGYAVDELIWRVPDGQLKRSQ*
AnnotationID:3923GeneID:3916
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:28
Gene Name:blc
Confidence Code:2
GeneProduct:outer membrane lipoprotein Blc
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:lipocalin
Functional Category Confidence Code:5
COGs:COG3040
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69624.1|AE016596_2 (AE016789) outer membrane lipoprotein Blc, putative [Pseudomonas
           putida KT2440]
          Length = 181

 Score =  234 bits (598), Expect = 2e-61
 Identities = 110/165 (66%), Positives = 128/165 (77%), Gaps = 1/165 (0%)

>gb|AAO58596.1| (AE016874) lipoprotein Blc [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 192

 Score =  218 bits (556), Expect = 1e-56
 Identities = 104/191 (54%), Positives = 134/191 (70%), Gaps = 2/191 (1%)








 
Structural Features:
COG3040, Blc, Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
CD-Length = 174 residues,  98.9% aligned
Score =  216 bits (552), Expect = 1e-57
Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 12/182 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14961




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24977




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34969




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3916_cdd.html


    		




 
URL:

















    ReferenceID:35808




  
Author/Investigator(s):
        Bishop RE, Penfold SS, Frost LS, Holtje JV, Weiner JH.





  
Title:
        Stationary phase expression of a novel Escherichia coli outer membrane lipoprotein and its relationship with mammalian apolipoprotein D. Implications for the origin of lipocalins.




  
PubMed:
        7559452


MedLine:
        




    
Source:
J Biol Chem. 1995 Sep 29;270(39):23097-103.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7559452









           
Homologs By Global Alignment 

           

       



     
Gene ID:3916
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6154
                           PA5107_tr
                           translation of PA5107
                           189
                           98.41
                           98.94
                           0
                           1003.0
     

     
     
170831
                           gb|AAG08492.1|AE004923_8
                           (AE004923) outer membrane lipoprotein Blc [Pseudomonas aeruginosa PAO1]
                           189
                           97.88
                           98.94
                           0
                           1000.0
     

     
     
170832
                           gb|AAN69624.1|AE016596_2
                           (AE016789) outer membrane lipoprotein Blc, putative [Pseudomonas putida KT2440]
                           193
                           58.54
                           69.43
                           16
                           596.0
     

     
     
170833
                           gb|AAN70602.1|AE016703_2
                           (AE016793) outer membrane lipoprotein Blc, putative [Pseudomonas putida KT2440]
                           195
                           54.35
                           64.61
                           11
                           551.0
     

     
     
170834
                           gb|AAO58596.1|
                           (AE016874) lipoprotein Blc [Pseudomonas syringae pv. tomato str. DC3000]
                           192
                           53.64
                           69.79
                           3
                           554.0
     

     






      

          
GC ORFID: 46918How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5107Glimmer Score: 

          
Start: 5287468Stop: 5286899

          
Length: 570


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5107 translation of PA5107Homolog Bit Score 390.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3815 (ORF: BLASTX 219.0), t_PA5107 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCGGTCTGCCGATCCGGGTGCTCTGCACCCTGTGGCTGGGCTTGCTGCTGGTCGGTTGCGCGGGCTCG 
CCGAAGAATCCGCCGGCCACCGAGCAGGTCGACCTCCAGCGCTACCAGGGCACCTGGTACGAACTGGCGCGC 
TTGCCGATGTTCTTCCAGCGCAACTGCGCGCAATCGGAAGCGCATTACCGCTTGCAGGAAGACCAGAGCATC 
CAGGTGATCAACCGCTGCCTGACCCGGGATGGCGAGTGGGAGCAGGTGGAGGGGCGGGCGGTCGCCCAGCAG 
CCAGGCCGCACCGACAAGTTGTGGGTGCGCTTCGACAACTGGTTCGCCAATCTCTTCCCCAACGTGGCGCGC 
GGCGACTATTGGGTGCTGGCGGTGGACGACGACTACCGCACCGCGCTGGTGGGCAATCCGAACCGTGAATAC 
CTGTGGCTGCTGTCGCGTACCCCGCAGGTTTCGCAGCAGACCCGCGAGCGTCTGCTGGAAGAAGCGCGCAGC 
CGCGGTTACGCGGTGGACGAGCTGATCTGGCGGGTACCCGACGGCCAGTTGAAGCGGAGCCAGTGA