ViewGene
Locus Name:
GeneID:
Location:

GeneID:3914
TrivialName: PA14_10710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10710
PAO1 Ortholog Locus:PA4116
Sequence Length:588
Protein Length:195
Start: 923847
Stop: 923260
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07503.1|AE004828_4 (AE004828) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/195 (98%), Positives = 194/195 (99%)
Sequence:
ATGTCCCCATCTCCATCGCCAGCCCTCGCCGCACTCCGCGACGCCACCCGTGACCTGCACGCAGAACTGGAC
CGCCGTTCGCCGTTGGGCGACGACGATCTCGACGACCGCGCCTACCTCGACCATGCCGGACGCATCCTTGGC
TGGCTGGAGCCTCTGGAGCGCGCGCTGCGCGACAACCGCAGCGGCTGGCCGGCGGCGCTGCGGGCCGACGCG
CGGCTGGTCAAGAGCGCCTGGCTGGAAAGCGACCTGCTGGCCGGCGGCATGAGCCGCGCGCAGGTGGAGGCG
CTACCGCGCTGCGCCGACCTGCCGAATGCGACACGGGCCGCGGAGGTCTTCGGGGTGGCCTACGTGATGGAA
GGCGCGACGCTGGGCGGCGCGTATCTCTACAAACGACTAGCTCCACGCCTGCCCGGTCTGCCGCTACAGTGG
TTGCGGGGCTACGGCCAGGCAACCGGGGTGCGCTGGCAGGAGTTTCTCGAACAGCTCGCCCGGCAGATCGAC
AGCCCCGAAGCCATCGGCCTTGCGCAGGATGCGGCACAGGCTACATTCCTTTCGTTTCGTCGATGGGTTCTC
GACGAAGCCTGA
Translation:
MSPSPSPALAALRDATRDLHAELDRRSPLGDDDLDDRAYLDHAGRILGWLEPLERALRDNRSGWPAALRADA
RLVKSAWLESDLLAGGMSRAQVEALPRCADLPNATRAAEVFGVAYVMEGATLGGAYLYKRLAPRLPGLPLQW
LRGYGQATGVRWQEFLEQLARQIDSPEAIGLAQDAAQATFLSFRRWVLDEA*
AnnotationID:3921GeneID:3914
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 12:12:41
Gene Name:
Confidence Code:3
GeneProduct:putative heme oxygenase
Cell Localization:()
Synonyms:PA4116
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3230,pfam01126
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3230, HemO, Heme oxygenase [Inorganic ion transport and metabolism]
CD-Length = 196 residues,  98.0% aligned
Score =  193 bits (492), Expect = 1e-50
Identities = 73/197 (37%), Positives = 89/197 (45%), Gaps = 7/197 (3%)

pfam01126, Heme_oxygenase, Heme oxygenase.
CD-Length = 204 residues, 100.0% aligned
Score =  143 bits (363), Expect = 9e-36
Identities = 52/205 (25%), Positives = 71/205 (34%), Gaps = 18/205 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7831




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24973




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36851




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3914_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3914
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6152
                           PA4116_tr
                           translation of PA4116
                           195
                           98.97
                           99.48
                           0
                           1002.0
     

     
     
170772
                           gb|AAG07503.1|AE004828_4
                           (AE004828) hypothetical protein PA4116 [Pseudomonas aeruginosa PAO1]
                           195
                           98.97
                           99.48
                           0
                           1002.0
     

     






      

          
GC ORFID: 46916How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4116Glimmer Score: 

          
Start: 4030090Stop: 4030677

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4116 translation of PA4116Homolog Bit Score 390.0

          
Other Homologs:  t_PA4116 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCCATCTCCATCGCCAGCCCTCGCCGCACTCCGCGACGCCACCCGTGACCTGCACGCAGAACTGGAC 
CGCCGTTCGCCGTTGGGCGACGACGATCTCGACGACCGCGCCTACCTCGACCATGCCGGACGCATCCTTGGC 
TGGCTGGAGCCTCTGGAGCGCGCGCTGCGCGACAACCGCAGCGGCTGGCCGGCGGCGCTGCGGGCCGACGCG 
CGGCTGGTCAAGAGCGCCTGGCTGGAAAGCGACCTGCTGGCCGGCGGCATGAGCCGCGCGCAGGTGGAGGCG 
CTACCGCGCTGCGCCGACCTGCCGAATGCGACACGGGCCGCGGAGGTCTTCGGGGTGGCCTACGTGATGGAA 
GGCGCGACGCTGGGCGGCGCGTATCTCTACAAACGACTAGCTCCACGCCTGCCCGGTCTGCCGCTACAGTGG 
TTGCGGGGCTACGGCCAGGCAACCGGGGTGCGCTGGCAGGAGTTTCTCGAACAGCTCGCCCGGCAGATCGAC 
AGCCCCGAAGCCATCGGCCTTGCGCAGGATGCGGCACAGGCTACATTCCTTTCGTTTCGTCGATGGGTTCTC 
GACGAAGCCTGA