ViewGene
Locus Name:
GeneID:
Location:

GeneID:3913
TrivialName: PA14_25340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25340
PAO1 Ortholog Locus:PA2995
Sequence Length:609
Protein Length:202
Start: 2215846
Stop: 2216454
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06383.1|AE004724_12 (AE004724) Na+-translocating NADH:quinone oxidoreductase subunit Nqr5 [Pseudomonas aeruginosa PAO1]
Identities = 202/202 (100%), Positives = 202/202 (100%)
Sequence:
ATGGAGCACTACATCAGCCTGTTCGTGAAGGCCGTGTTCGTCGAGAACATGGCGCTGGCGTTCTTCCTCGGC
ATGTGTACCTTCATCGCCATCTCGAAGAAGGTGGAGACCGCCATCGGCCTGGGTATCGCGGTGATCGTGGTG
CAGACCATCACCGTGCCGGCCAACAACCTGATCTACACCTACCTGCTCAAGGACGGCGCGCTGGCCTGGGCC
GGGCTGCCCGAGGTGGACCTGAGCTTCCTCGGCCTGCTCAGCTACATCGGGGTGATCGCCGCCATCGTGCAG
ATCCTCGAGATGCTCCTCGACAAGTACGTACCCAGTCTCTACAACGCGCTGGGCGTGTTCCTGCCCCTGATC
ACGGTGAACTGCGCGATCATGGCCGGCTCGCTGTTCATGGTCGAGCGCGACTACAACCTTGCCGAGAGCACG
GTGTACGGCGTCGGCTCGGGCTTTTCCTGGGCGCTGGCGATCGCCGCGCTGGCGGGTATCCGCGAGAAGCTC
AAGTACAGCGACGTCCCCGAGGGCCTGCAGGGCCTGGGGATCACCTTCATCACCATCGGCCTGATGTCGTTG
GGCTTCATGTCGTTCTCCGGCGTGCAGTTGTAA
Translation:
MEHYISLFVKAVFVENMALAFFLGMCTFIAISKKVETAIGLGIAVIVVQTITVPANNLIYTYLLKDGALAWA
GLPEVDLSFLGLLSYIGVIAAIVQILEMLLDKYVPSLYNALGVFLPLITVNCAIMAGSLFMVERDYNLAEST
VYGVGSGFSWALAIAALAGIREKLKYSDVPEGLQGLGITFITIGLMSLGFMSFSGVQL*
AnnotationID:3920GeneID:3913
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:09
Gene Name:nqrE
Confidence Code:2
GeneProduct:Na+-translocating NADH:quinone oxidoreductase subunit Nqr5
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:Na+-translocating NADH-quinone reductase subunit E
Functional Category Confidence Code:5
COGs:COG2209
Secondary Functional Category(ies):
EC Number:1.6.5.-
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD86305.1| (BX321864) RnfA-Nqr electron transport subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 202

 Score =  315 bits (807), Expect = 1e-85
 Identities = 149/202 (73%), Positives = 180/202 (89%)

>gb|AAN54178.1|AE015555_5 (AE015555) NADH:ubiquinone oxidoreductase, Na translocating,
           hydrophobic membrane protein NqrE [Shewanella oneidensis
           MR-1]
          Length = 202

 Score =  304 bits (778), Expect = 2e-82
 Identities = 151/202 (74%), Positives = 171/202 (84%)

>gb|AAN53981.1|AE015535_9 (AE015535) NADH:ubiquinone oxidoreductase, Na translocating,
           hydrophobic membrane protein NqrE [Shewanella oneidensis
           MR-1]
          Length = 202

 Score =  297 bits (760), Expect = 3e-80
 Identities = 139/202 (68%), Positives = 173/202 (85%)






 
Structural Features:
COG2209, NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, 
subunit NqrE 
[Energy production and conversion]






   
Genomic Context:






   
Comment:


















    ReferenceID:7829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24971




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36060




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3913_cdd.html


    		




 
URL:

















    ReferenceID:36455




  
Author/Investigator(s):
        Hayashi M, Hirai K, Unemoto T.





  
Title:
        Sequencing and the alignment of structural genes in the nqr operon encoding the Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus.




  
PubMed:
        7729558


MedLine:
        




    
Source:
FEBS Lett. 1995 Apr 17;363(1-2):75-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95246889&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:3913
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6151
                           PA2995_tr
                           translation of PA2995
                           202
                           99.99
                           99.99
                           0
                           1001.0
     

     
     
170719
                           gb|AAG06383.1|AE004724_12
                           (AE004724) Na+-translocating NADH:quinone oxidoreductase subunit Nqr5 [Pseudomonas aeruginosa PAO1]
                           202
                           99.99
                           99.99
                           0
                           1001.0
     

     
     
170721
                           gb|AAN54178.1|AE015555_5
                           (AE015555) NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE [Shewanella oneidensis MR-1]
                           202
                           74.75
                           84.65
                           0
                           778.0
     

     
     
170720
                           emb|CAD86305.1|
                           (BX321864) RnfA-Nqr electron transport subunit [Nitrosomonas europaea ATCC 19718]
                           202
                           73.76
                           89.10
                           0
                           807.0
     

     
     
170734
                           emb|CAC92471.1|
                           (AJ414156) Na+-translocating NADH-quinone reductase subunit E [Yersinia pestis CO92]
                           202
                           72.27
                           83.66
                           4
                           745.0
     

     






      

          
GC ORFID: 46915How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2995Glimmer Score: 

          
Start: 2738079Stop: 2737471

          
Length: 609


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2995 translation of PA2995Homolog Bit Score 390.0

          
Other Homologs:  t_PA2995 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCACTACATCAGCCTGTTCGTGAAGGCCGTGTTCGTCGAGAACATGGCGCTGGCGTTCTTCCTCGGC 
ATGTGTACCTTCATCGCCATCTCGAAGAAGGTGGAGACCGCCATCGGCCTGGGTATCGCGGTGATCGTGGTG 
CAGACCATCACCGTGCCGGCCAACAACCTGATCTACACCTACCTGCTCAAGGACGGCGCGCTGGCCTGGGCC 
GGGCTGCCCGAGGTGGACCTGAGCTTCCTCGGCCTGCTCAGCTACATCGGGGTGATCGCCGCCATCGTGCAG 
ATCCTCGAGATGCTCCTCGACAAGTACGTACCCAGTCTCTACAACGCGCTGGGCGTGTTCCTGCCCCTGATC 
ACGGTGAACTGCGCGATCATGGCCGGCTCGCTGTTCATGGTCGAGCGCGACTACAACCTTGCCGAGAGCACG 
GTGTACGGCGTCGGCTCGGGCTTTTCCTGGGCGCTGGCGATCGCCGCGCTGGCGGGTATCCGCGAGAAGCTC 
AAGTACAGCGACGTCCCCGAGGGCCTGCAGGGCCTGGGGATCACCTTCATCACCATCGGCCTGATGTCGTTG 
GGCTTCATGTCGTTCTCCGGCGTGCAGTTGTAA